June 2005 Archives by author

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Starting: Wed Jun 1 00:33:28 CEST 2005
Ending: Thu Jun 30 17:32:02 CEST 2005
Messages: 364

• [BioC] Questions about R on linux   Ting-Yuan Liu (FHCRC)
• [BioC] Building R packages   michael watson (IAH-C)
• [BioC] other.columns with ImaGene data (Limma read.maimages)   michael watson (IAH-C)
• [BioC] read.GenePix not opening connection   michael watson (IAH-C)
• [BioC] read.GenePix not opening connection   michael watson (IAH-C)
• [BioC] read.GenePix not opening connection   michael watson (IAH-C)
• [BioC] Boston Bioc Training July 2005 Registration open   Vincent Carey 525-2265
• [BioC] Re: how to evaluate the arrays quality?   Jordi Altirriba Gutiérrez
• [BioC] random block effect and technical replicates within array at the same in linear model using Limma ?   Peter Sørensen (HAG)
• [BioC] meta data   Adam
• [BioC] how to use principal component analysis in R   Aedin
• [BioC] Analyzing mulitple tissues   Uri David Akavia
• [BioC] Analyzing mulitple tissues   Uri David Akavia
• [BioC] Ruuid requires specific MAKEFLAGS setting on Fedora Core 2   Uri David Akavia
• [BioC] Analyzing mulitple tissues   Uri David Akavia
• [BioC] GC-RMA - interpretation of the expression levels   Uri David Akavia
• [BioC] multtest   Yasemin Akdas
• [BioC] Analyzing mulitple tissues   Naomi Altman
• [BioC] Analyzing mulitple tissues   Naomi Altman
• [BioC] Agilent Arrays   Naomi Altman
• [BioC] 5 genes with 4 diff. groups, Howmany Cells needs to be extracted and do LIMMA?   Naomi Altman
• [BioC] differences or 1-channel (was Re: Agilent Arrays)   Naomi Altman
• [BioC] Agilent Arrays   Naomi Altman
• [BioC] ArrayQuest at MUSC   Gary Argraves
• [BioC] Defining and handling replicates   Jonathan Arthur
• [BioC] Defining and handling replicates   Jonathan Arthur
• [BioC] Building R packages   Douglas Bates
• [BioC] Questions about R on linux   Henrik Bengtsson
• [BioC] Many missing GO terms from GOHyperG call using mgu74av2   Dick Beyer
• [BioC] Many missing GO terms from GOHyperG call using mgu74av2   Dick Beyer
• [BioC] correlation of dye swap experiments   Sheetal Bhan
• [BioC] problem with combineAffyBatch   Jared J. Bisogni
• [BioC] Use of RMA in increasingly-sized datasets   Ben Bolstad
• [BioC] How to use affy's image function on RMA values?   Ben Bolstad
• [BioC] memory problem with fitPLM in package affyPLM   Ben Bolstad
• [BioC] memory problem with fitPLM in package affyPLM   Ben Bolstad
• [BioC] memory problem with fitPLM in package affyPLM   Ben Bolstad
• [BioC] affy: Trouble Creating Custom Processing Methods for summary expression   Ben Bolstad
• [BioC] Error in fitPLM   Ben Bolstad
• [BioC] Reference for Volcano plot   Anthony Bosco
• [BioC] problem with fitPLM   Pedro Botías
• [BioC] Error in fitPLM   Pedro Botías
• [BioC] Error in fitPLM   Pedro Botías
• [BioC] Affymetrix analysis with two replicates   Pedro Botías
• [BioC] segmentation fault using Rgraphviz   Raffaele Calogero
• [BioC] How to use distance functions from hopach package in a heatmap?   Stefano Calza
• [BioC] custom Methods for summary expression value   Stefano Calza
• [BioC] custom Methods for summary expression value - SOLVED   Stefano Calza
• [BioC] affy: Trouble Creating Custom Processing Methods for summary expression   Alexander C Cambon
• [BioC] affy: Trouble Creating Custom Processing Methods for summary expression   Alexander C Cambon
• [BioC] R: Pathway Information   Alexander C Cambon
• [BioC] How to use distance functions from hopach package in a heatmap?   Lourdes Peña Castillo
• [BioC] How to get a heatmap of a dendrogram subtree?   Lourdes Peña Castillo
• [BioC] cross experiments or geo series normalization   Chuming Chen
• [BioC] pools and tech rep   Ariel Chernomoretz
• [BioC] affycomp hgu133 assessment error   Ariel Chernomoretz
• [BioC] affycomp hgu133 assessment error   Ariel Chernomoretz
• [BioC] IRC channel for BioC?   Robert Citek
• [BioC] IRC channel for BioC?   Robert Citek
• [BioC] IRC channel for BioC?   Robert Citek
• [BioC] Installing Bioconductor under Linux   Robert Citek
• [BioC] Error: cannot allocate vector of size 190104 Kb   Christina Curtis
• [BioC] GC-RMA - interpretation of the expression levels   Sean Davis
• [BioC] comparative genomics   Sean Davis
• [BioC] operation between sets of genes   Sean Davis
• [BioC] Orthologs search   Sean Davis
• [BioC] biomaRt getXref problem   Sean Davis
• [BioC] chromosome position --> gene   Sean Davis
• [BioC] biomaRt package listMarts() error   Sean Davis
• [BioC] affy - pm() and mm() not returning affyids   Marcus Davy
• [BioC] Exact structure of RGList object (limma)   Marcus Davy
• [BioC] negative values in raw data   Guillaume Deplaine
• [BioC] Installation of Bioconductor 1.6 under Mac OS 10.3   Hannes Drexler
• [BioC] chromosome position --> gene   Steffen Durinck
• [BioC] biomaRt package listMarts() error   Steffen Durinck
• [BioC] Building R packages   E Motakis, Mathematics
• [BioC] sam   D.Enrique ESCOBAR ESPINOZA
• [BioC] concentrations   Mohammad Esad-Djou
• [BioC] Re: concentrations   Mohammad Esad-Djou
• [BioC] PM-intensity and probeset, matrix   Mohammad Esad-Djou
• [BioC] PM-intensity and probeset, matrix   Mohammad Esad-Djou
• [BioC] R: Pathway Information   Gustavo H. Esteves
• [BioC] segmentation fault using Rgraphviz   Seth Falcon
• [BioC] Affymetrix SDK Bioconductor package?   Seth Falcon
• [BioC] IRC channel for BioC?   Seth Falcon
• [BioC] IRC channel for BioC?   Seth Falcon
• [BioC] Installing Bioconductor under Linux   Seth Falcon
• [BioC] Installing Bioconductor under Linux   Seth Falcon
• [BioC] Resourcerer, Error in author[["authors"]]   Seth Falcon
• [BioC] meta data   Seth Falcon
• [BioC] misnamed annotation environments with annaffy   Seth Falcon
• [BioC] Updated packages available in BioC 1.6 release   Seth Falcon
• [BioC] BioC package: annotate updated in release 1.6 repository   Seth Falcon
• [BioC] help with heat maps and clustering   Seth Falcon
• [BioC] ANN: BioC2005 Conference scheduled for August in Seattle   Seth Falcon
• [BioC] BioC 1.6 Repository Updated   Seth Falcon
• [BioC] Error in .initContents() : couldn't find function "isGeneric"   Seth Falcon
• [BioC] Changes in GC-RMA 1.1.4 compared to 1.1.3   Seth Falcon
• [BioC] Spikein Data Package: Win32 download problem   Seth Falcon
• [BioC] upload annotation data to BioC ?   Seth Falcon
• [BioC] wrong format in GOTERM   Seth Falcon
• [BioC] Beginner with Affimetrix Data   Seth Falcon
• [BioC] error message with GCRMA   Seth Falcon
• [BioC] Many missing GO terms from GOHyperG call using mgu74av2   Seth Falcon
• [BioC] biomaRt package listMarts() error   Seth Falcon
• [BioC] Beginner with Affimetrix Data   Cecilia Fernandez
• [BioC] duplicateCorrelation and design matrix   Carolyn Fitzsimmons
• [BioC] error message with GCRMA   Richard Friedman
• [BioC] error message with GCRMA   Richard Friedman
• [BioC] error message with GCRMA   Richard Friedman
• [BioC] source URL changed for AnnBuilder?   JUNHAI GUO
• [BioC] IRC channel for BioC?   Robert Gentleman
• [BioC] Ruuid requires specific MAKEFLAGS setting on Fedora Core 2   Robert Gentleman
• [BioC] Category package problems with Vignette documentation   Robert Gentleman
• [BioC] dynamic mget with affy annotation   Robert Gentleman
• [BioC] operation between sets of genes   Robert Gentleman
• [BioC] Pathway Information   Robert Gentleman
• [BioC] R: R: Pathway Information   Robert Gentleman
• [BioC] cross experiments or geo series normalization   Robert Gentleman
• [BioC] IRC channel for BioC?   Jeff Gentry
• [BioC] bioc checkout   Jeff Gentry
• [BioC] Questions about R on linux   Jeff Gentry
• [BioC] table2html problem   Giulio Di Giovanni
• [BioC] Installation of Bioconductor 1.6 under Mac OS 10.3   Rob J Goedman
• [BioC] R: Pathway Information   Alberto Goldoni
• [BioC] R: R: Pathway Information   Alberto Goldoni
• [BioC] Use of RMA in increasingly-sized datasets   Darlene Goldstein
• [BioC] How to determine genes' presence   Wuming Gong
• [BioC] CornChip0 CDF Package   Michael Gore
• [BioC] Changes in GC-RMA 1.1.4 compared to 1.1.3   Groot, Philip de
• [BioC] CyberT: Paired Bayes t-test (Bayes corrected p-values)   Groot, Philip de
• [BioC] Pathway Information   Ramsi Haddad
• [BioC] justMAS reliability   Eitan Halper-Stromberg
• [BioC] justMAS and mas5   Eitan Halper-Stromberg
• [BioC] R.fold and stdev in SAM (siggenes package)   Xia Han
• [BioC] Affymetrix SDK Bioconductor package?   Kasper Daniel Hansen
• [BioC] Affymetrix SDK Bioconductor package?   Kasper Daniel Hansen
• [BioC] cannot install 1.6 Binaries from within 2.1.0a on Mac OS X 10.4   Kasper Daniel Hansen
• [BioC] Questions about R on linux   Kasper Daniel Hansen
• [BioC] IRC channel for BioC?   Cyrus Harmon
• [BioC] makeContrasts in limma   He, Yiwen (NIH/CIT)
• SV: [BioC] random block effect and technical replicates within array at the same in linear model using Limma?   Jakob Hedegaard
• [BioC] Increase in CV of replicated spots after normalization?   Jakob Hedegaard
• [BioC] troubleshooting non-numeric data   Stephen Henderson
• [BioC] GC-RMA - interpretation of the expression levels   Susan Hilsenbeck
• [BioC] New CRAN package `coin'   Torsten Hothorn
• [BioC] estrogen dataset (tif files, before after scanning)   Wolfgang Huber
• [BioC] negative values in raw data   Wolfgang Huber
• [BioC] problem with combineAffyBatch   Wolfgang Huber
• [BioC] Increase in CV of replicated spots after normalization?   Wolfgang Huber
• [BioC] Increase in CV of replicated spots after normalization?   Wolfgang Huber
• [BioC] Agilent Arrays   Wolfgang Huber
• [BioC] Agilent Arrays   Wolfgang Huber
• [BioC] Agilent Arrays   Wolfgang Huber
• [BioC] readGPR (arrayQuality)   Wolfgang Huber
• [BioC] (no subject)   Islam, Ariful
• [BioC] Orthologs search   Jamain, Adrien J
• [BioC] Install all CDF, Probes, Annotation metaData in One-Shot or Update them, How?   Saurin Jani
• [BioC] Install all CDF, Probes, Annotation metaData in One-Shot or Update them, How?   Saurin Jani
• [BioC] Installing Bioconductor under Linux   Saurin Jani
• [BioC] 5 genes with 4 diff. groups, Howmany Cells needs to be extracted and do LIMMA?   Saurin Jani
• [BioC] Pathway Information   Saurin D. Jani
• [BioC] Beginner with Affimetrix Data   Saurin D. Jani
• [BioC] limma factorial designs with technical replicates   Jianping Jin
• [BioC] MGUAv1 CEL files and MGUAv2 CDF File   Ryosuke Kadoi
• [BioC] A general data analysis question   Khan, Sohail
• [BioC] Ruuid requires specific MAKEFLAGS setting on Fedora Core 2   Jan T. Kim
• [BioC] Questions about R on linux   Jan T. Kim
• [BioC] biomaRt getXref problem   Kimpel, Mark W
• [BioC] Use of RMA in increasingly-sized datasets   David Kipling
• [BioC] Re: how to evaluate the arrays quality?   David Kipling
• [BioC] Analyzing mulitple tissues   David Kipling
• [BioC] Analyzing mulitple tissues   David Kipling
• [BioC] Pathway Information   David Kipling
• [BioC] Agilent Arrays   Michael Kirk
• [BioC] Agilent Arrays   Michael Kirk
• [BioC] readGPR (arrayQuality)   Tom Koonen
• [BioC] read.GenePix not opening connection   Tony Kowal
• [BioC] sciviews   Faouzi LYAZRHI
• [BioC] affymetrix CDF file problem   Karin Lagesen
• [BioC] M value in topTable and Fold Change   Marcelo Luiz de Laia
• [BioC] simpleAffy, custom chip error   Hilmar Lapp
• [BioC] affy - pm() and mm() not returning affyids   Mark Larsen
• [BioC] Questions about R on linux   Steve Lee
• [BioC] Affymetrix MASv5 code & sample data   Mike Lelivelt
• [BioC] Affymetrix MASv5 code & sample data   Mike Lelivelt
• [BioC] Spikein Data Package: Win32 download problem   Simon Lin
• [BioC] marray intensity normalization? dangerous waters   Simon Lin
• [BioC] staff/postdoc position in signal processing   Simon Lin
• [BioC] how to use principal component analysis in R   James MacDonald
• [BioC] Building R packages   James MacDonald
• [BioC] Changes in GC-RMA 1.1.4 compared to 1.1.3   James MacDonald
• [BioC] Beginner with Affimetrix Data   James MacDonald
• [BioC] error message with GCRMA   James MacDonald
• [BioC] error message with GCRMA   James MacDonald
• [BioC] (no subject)   James MacDonald
• [BioC] Install all CDF, Probes, Annotation metaData in One-Shot or Update them, How?   James W. MacDonald
• [BioC] MAS 4 in BioC?   James W. MacDonald
• [BioC] 100K SNP chips for linkage   James W. MacDonald
• [BioC] meta data   James W. MacDonald
• [BioC] misnamed annotation environments with annaffy   James W. MacDonald
• [BioC] affymetrix CDF file problem   James W. MacDonald
• [BioC] What's the meaning of "covar" in the widget of ReadAffy and how to determine this value?   James W. MacDonald
• [BioC] combine pm and oligo sequence information   James W. MacDonald
• [BioC] combine pm and oligo sequence information   James W. MacDonald
• [BioC] CornChip0 CDF Package   James W. MacDonald
• [BioC] Error: cannot allocate vector of size 190104 Kb   James W. MacDonald
• [BioC] GO from hu35ksuba   James W. MacDonald
• [BioC] Affymetrix analysis with two replicates   James W. MacDonald
• [BioC] Changes in GC-RMA 1.1.4 compared to 1.1.3   James W. MacDonald
• [BioC] annotate, htmlpage and othernames   James W. MacDonald
• [BioC] help with heat maps and clustering   Kenneth Maimo
• [BioC] troubleshooting non-numeric data   Kenneth Maimo
• [BioC] How to use affy's image function on RMA values?   Malard, Joel M
• [BioC] Resourcerer, Error in author[["authors"]]   Morten Mattingsdal
• [BioC] upload annotation data to BioC ?   Morten Mattingsdal
• [BioC] annotate, htmlpage and othernames   Morten Mattingsdal
• [BioC] annotate, htmlpage and othernames   Morten Mattingsdal
• [BioC] Increase in CV of replicated spots after normalization?   Claus Mayer
• [BioC] Agilent Arrays   Claus Mayer
• [BioC] Saturation in Affy chips   McGee, Monnie
• [BioC] RMA for bad chips   Jai Prakash Mehta
• [BioC] cannot install 1.6 Binaries from within 2.1.0a on Mac OS X 10.4   Simon Melov
• [BioC] Pathway Information   Auer Michael
• [BioC] nf kappa pathway   Auer Michael
• [BioC] siggenes SAM FDR, # false discrepancies   Jacob Michaelson
• [BioC] siggenes SAM FDR, # false discrepancies   Jacob Michaelson
• [BioC] dynamic mget with affy annotation   Jacob Michaelson
• [BioC] misnamed annotation environments with annaffy   Jacob Michaelson
• [BioC] marray intensity normalization?   Jake Michaelson
• [BioC] (no subject)   Amy Mikhail
• [BioC] read.GenePix not opening connection   Amy Mikhail
• [BioC] read.GenePix not opening connection   Amy Mikhail
• [BioC] read.GenePix not opening connection   Amy Mikhail
• [BioC] read.GenePix not opening connection   Amy Mikhail
• [BioC] read.GenePix not opening connection   Amy Mikhail
• [BioC] read.GenePix not opening connection   Amy Mikhail
• [BioC] Re: how to evaluate the arrays quality?   Crispin Miller
• [BioC] Anyone get plier to install on OS X?   Crispin Miller
• [BioC] simpleAffy, custom chip error   Crispin Miller
• [BioC] justMAS and mas5   Crispin Miller
• [BioC] error with results.summary in simpleaffy   Crispin Miller
• [BioC] justMAS reliability   Crispin Miller
• [BioC] Question (vennDiagram vs. topTable) + Patch (plotTitle for vennDiagram) for AffylmGUI 1.3.0   Steffen Moeller
• [BioC] Questions about R on linux   Saroj Mohapatra
• [BioC] estrogen dataset (tif files, before after scanning)   Rene Nederhand
• [BioC] Looking for raw microarray data for teaching   Rene Nederhand
• [BioC] Fwd: Looking for raw microarray data for teaching   Rene Nederhand
• [BioC] Category package problems with Vignette documentation   Neefs, Jean-Marc [PRDBE]
• Subject: Re: [BioC] Category package problems with Vignette, solv ed   Neefs, Jean-Marc [PRDBE]
• [BioC] How to increase row height when using heatmap function?   Ochsner, Scott A
• [BioC] R package on the Noise sampling method   Ankit Pal
• [BioC] bug for MTP   Haiyan Pan
• [BioC] readGPR (arrayQuality)   Paquet, Agnes
• [BioC] read.GenePix not opening connection   Paquet, Agnes
• [BioC] Postdoctoral fellowship positions   Peter J Park
• [BioC] Re: how to evaluate the arrays quality   Craig Parman
• [BioC] other.columns with ImaGene data (Limma read.maimages)   Richard Pearson
• [BioC] other.columns with ImaGene data (Limma read.maimages)   Richard Pearson
• [BioC] Many missing GO terms from GOHyperG call using mgu74av2   Francois Pepin
• [BioC] GC-RMA - interpretation of the expression levels   Pintilie, Melania
• [BioC] MTP bug   Katherine Pollard
• [BioC] Re: concentrations   Adaikalavan Ramasamy
• [BioC] Re: concentrations   Adaikalavan Ramasamy
• [BioC] Re: concentrations   Adaikalavan Ramasamy
• [BioC] Affymetrix MASv5 code & sample data   Adaikalavan Ramasamy
• [BioC] PM-intensity and probeset, matrix   Adaikalavan Ramasamy
• [BioC] PM-intensity and probeset, matrix   Adaikalavan Ramasamy
• [BioC] GO from hu35ksuba   Adaikalavan Ramasamy
• [BioC] GO from hu35ksuba   Adaikalavan Ramasamy
• [BioC] Re: Use of RMA in increasingly-sized datasets   Swati Ranade
• [BioC] Re: Use of RMA in increasingly-sized datasets   Swati Ranade
• [BioC] MAS 4 in BioC?   Axel Rasche
• [BioC] Affymetrix SDK Bioconductor package?   A.J. Rossini
• [BioC] Affymetrix SDK Bioconductor package?   A.J. Rossini
• [BioC] Limma analysis of focused arrays vs. whole genome arrays   A.J. Rossini
• [BioC] NRC Postdoctoral Research Associateships at NIST   Marc Salit
• [BioC] Anova vs ratio   Lana Schaffer
• [BioC] Limma analysis of focused arrays vs. whole genome arrays   Mike Schaffer
• [BioC] sam   Holger Schwender
• [BioC] limma example Weaver Data   Gordon Smyth
• [BioC] Defining and handling replicates   Gordon Smyth
• [BioC] Analyzing mulitple tissues   Gordon Smyth
• [BioC] Analyzing mulitple tissues   Gordon Smyth
• [BioC] Limma analysis of focused arrays vs. whole genome arrays   Gordon Smyth
• [BioC] marray intensity normalization?   Gordon Smyth
• [BioC] other.columns with ImaGene data (Limma read.maimages)   Gordon Smyth
• [BioC] Bioconductor Digest, Vol 28, Issue 23   Gordon Smyth
• [BioC] Agilent Arrays   Gordon Smyth
• [BioC] Agilent Arrays   Gordon Smyth
• [BioC] CyberT: Paired Bayes t-test (Bayes corrected p-values)   Gordon Smyth
• [BioC] spike control normalization   Gordon Smyth
• [BioC] readGPR (arrayQuality)   Gordon Smyth
• [BioC] limma example Weaver Data   Gordon K Smyth
• [BioC] random block effect and technical replicates within array at the same in linear model using Limma?   Gordon K Smyth
• [BioC] Defining and handling replicates   Gordon K Smyth
• [BioC] Analyzing mulitple tissues   Gordon K Smyth
• [BioC] makeContrasts in limma   Gordon K Smyth
• SV: [BioC] random block effect and technical replicates within array at the same in linear model using Limma?   Gordon K Smyth
• [BioC] limma problems   Gordon K Smyth
• [BioC] GenePix files .mrg   Gordon K Smyth
• [BioC] Exact structure of RGList object (limma)   Gordon K Smyth
• [BioC] Agilent Arrays   Gordon K Smyth
• [BioC] comparative genomics   Sorani, Marco
• [BioC] chromosome position --> gene   Sorani, Marco
• [BioC] Error in .initContents() : couldn't find function "isGeneric"   Straubhaar, Juerg
• [BioC] Error in .initContents() : couldn't find function"isGeneric"   Straubhaar, Juerg
• [BioC] error in goTools   Straubhaar, Juerg
• [BioC] spike control normalization   NATALIA F TCHETCHERINA
• [BioC] Installing Bioconductor under Linux   Ido M. Tamir
• [BioC] Job opportunity: Chair in Bioinformatics   Charles Taylor
• [BioC] GenePix files .mrg   Bogdan Terletskiy
• [BioC] Help with SOM membership   Ken Termiso
• [BioC] Anyone get plier to install on OS X?   Ken Termiso
• [BioC] Anyone get plier to install on OS X?   Ken Termiso
• [BioC] Exact structure of RGList object (limma)   Ken Termiso
• [BioC] error msg w/ read.marrayRaw() : "targets" matched by multiple actual arguments   Ken Termiso
• [BioC] how to get the normalized genes expression values with vsn   Joern Toedling
• [BioC] error msg w/ read.marrayRaw() : "targets" matched by multiple actual arguments   Joern Toedling
• [BioC] combine pm and oligo sequence information   Wang, Yonghong (NIH/NCI)
• [BioC] Changes in GC-RMA 1.1.4 compared to 1.1.3   Warnes, Gregory R
• [BioC] limma problems   Jakub Orzechowski Westholm
• [BioC] organism = mouse or Mus Musculus in AnnBuilder   Christopher Wilkinson
• [BioC] table2html problem   Jean Yee Hwa Yang
• [BioC] goodness-of-fit for limma   Ye, Bin
• [BioC] goodness-of-fit for limma   Ye, Bin
• [BioC] biomaRt package listMarts() error   Ye, Bin
• [BioC] biomaRt package listMarts() error   Ye, Bin
• [BioC] Resourcerer, Error in author[["authors"]]   John Zhang
• [BioC] Resourcerer, Error in author[["authors"]]   John Zhang
• [BioC] organism = mouse or Mus Musculus in AnnBuilder   John Zhang
• [BioC] misnamed annotation environments with annaffy   John Zhang
• [BioC] Pathway Information   John Zhang
• [BioC] R: Pathway Information   John Zhang
• [BioC] source URL changed for AnnBuilder?   John Zhang
• [BioC] Many missing GO terms from GOHyperG call using mgu74av2   John Zhang
• [BioC] Many missing GO terms from GOHyperG call using mgu74av2   John Zhang
• [BioC] Many missing GO terms from GOHyperG call using mgu74av2   John Zhang
• [BioC] error with results.summary in simpleaffy   Jack Zhu
• [BioC] error with results.summary in simpleaffy   Jack Zhu
• [BioC] Installing Bioconductor under Linux   fhong at salk.edu
• [BioC] Installing Bioconductor under Linux   fhong at salk.edu
• [BioC] goodness-of-fit for limma   fhong at salk.edu
• [BioC] goodness-of-fit for limma   fhong at salk.edu
• [BioC] memory problem with fitPLM in package affyPLM   fhong at salk.edu
• [BioC] memory problem with fitPLM in package affyPLM   fhong at salk.edu
• [BioC] memory problem with fitPLM in package affyPLM   fhong at salk.edu
• [BioC] Installing Bioconductor under Linux   fhong at salk.edu
• [BioC] PM-intensity and probeset, matrix   fhong at salk.edu
• [BioC] wrong format in GOTERM   fhong at salk.edu
• [BioC] problem with hopach2tree()   ali filali
• [BioC] how to evaluate the arrays quality?   weinong han
• [BioC] how to use principal component analysis in R   weinong han
• [BioC] how to get the normalized genes expression values with vsn   diego huck
• [BioC] operation between sets of genes   diego huck
• [BioC] Anyone get plier to install on OS X?   stefano iacus
• [BioC] bioc checkout   stefano iacus
• [BioC] bioc checkout   stefano iacus
• [BioC] limma: decideTests, which option to chose?   kerick at molgen.mpg.de
• [BioC] affy - pm() and mm() not returning affyids   larsenmtl at comcast.net
• [BioC] Dye swap and duplicate spots   lepalmer at notes.cc.sunysb.edu
• [BioC] Negative Values (?!) loaded by affy package from CEL file of MOE430A   lgautier at altern.org
• [BioC] Re: Use of RMA in increasingly-sized datasets   t-kawai at hhc.eisai.co.jp
• [BioC] What's the meaning of "covar" in the widget of ReadAffy and how to determine this value?   Elaine yang

Last message date: Thu Jun 30 17:32:02 CEST 2005
Archived on: Fri Jul 1 01:37:37 CEST 2005

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