[BioC] affycomp hgu133 assessment error

[Ariel Chernomoretz]

my mistake!

I did not realize that it was a HG-U133A_tag array, and not a HG-U133A one.
There were some control probesets in the former that did not appear in the 
second one :
                : AFFX-r2-TagA_at
                : AFFX-r2-TagB_at
                : AFFX-r2-TagC_at
                : AFFX-r2-TagD_at
                : AFFX-r2-TagE_at
                : AFFX-r2-TagF_at
                : AFFX-r2-TagG_at
                : AFFX-r2-TagH_at

Can anyone tell me if this is the only difference between both arrays?

thanks,
Ariel./




On June 29, 2005 12:34 pm, Ariel Chernomoretz wrote:
> affycomp hgu133 assessment error
>Dear list,
>
>I get the following error when trying to run affycomp on rma expressions of 
>the hgu133a spike in experiment,
>
> > s.rma  <-read.newspikein("eset_hgu133a/rma133.csv")
> > a.rma  <-assessSpikeIn2(s.rma,method.name="rma")
> Performing 3 assessments that will take a few secondsError in 
> exprset[-spikein, ] : only 0's may mix with negative subscripts
>
>The command runs smoothly on hgu95a data, though 
>Any help would be greatly appreciated
>regards,
>Ariel./



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