[BioC] Pathway Information

[Robert Gentleman]

Well, if so (regarding R and BioC in the back end, or other open source 
projects), it is considered collegial to state that on the front end and 
acknowledge the hard work of all the developers whose programs you are 
using.

And please do read the posting guide, as this has nothing to do with the 
subject line.

  Best wishes,
   Robert


David Kipling wrote:
> Hi
> 
> Apologies to all for this being not strictly speaking BioC (although the back
> end does use some R/BioC functions to make heatmaps and the like)!
> 
> Have a look at:
> 
> http://www.madras.uwcm.ac.uk/
> 
> This is an Affy-focussed web-based environment where you can upload and review
> your data in a gene-centric fashion whilst also getting a biologist-friendly
> "executive summary" of what that gene does.  It's free :-)
> 
> There is a public guest login option which gives you a few token public datasets
> to browse.   If you go into Pathways you'll find we've dumped all the BioCarta
> pathways into it as well, including NFkappa B.  Select this and you get all the
> genes on your affy chip from this pathway and browse away.
> 
> If anyone wants to discuss this with me in more detail (e.g. how to get a login
> or local install) then please contact me off-list.
> 
> Regards
> 
> David
> 
> 
> Professor David Kipling
> Department of Pathology,
> School of Medicine,
> Cardiff University,
> Heath Park
> Cardiff CF14 4XN
> 
> Email:  KiplingD at cardiff.ac.uk
> Tel:  +44 29 2074 4847
> fax:  +44 29 2074 4276
> 
>>>>"Auer Michael" <michael.auer at meduniwien.ac.at> 06/16/05 10:24 AM >>>
> 
> Hi
> 
> Can anybody tell me the following
> 
> I want to identify genes which are located on a certain pathway NF Kappa.
> How can I obtain such an information. Which package is appropriate and
> which commands are needed. If any body ever encounterd the same problem
> please let me know.
> 
> Michael
> 
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