[BioC] annotate, htmlpage and othernames

[James W. MacDonald]

Morten Mattingsdal wrote:
> Hello,
> 
> Im having some trouble with the htmlpage function in the package 
> annotate. I want to import my top 100 list of probe ID's and use my 
> annotation package to generate a html page. I am able to build the 
> hyperlinks, but htmlpage will not paste the contents in "othernames" 
> into the table.
> 
> here is my code:
> library(AgilentHuman1av2)
> library(annotate)
> id<-read.table("24t_probeid.txt", header=T)
> probe<-as.matrix(id)
> symbol <- getSYMBOL(probe,data="AgilentHuman1av2")
> ll <- getLL(probe,data="AgilentHuman1av2")
> res<-data.frame(probe,cbind(unlist(symbol)))
> names(res)<-c("Probe ID","Gene Symbol")
> htmlpage(ll,filename="ll.html",title="Test",othernames=res,table.head=c("LocusID",names(res)),table.center=TRUE)
> 
> I am using R 2.1.0, Annotate 1.5.15 on Linux.

I think this is due to a bug I recently fixed. Try upgrading to annotate 
1.5.16 and see if that helps.

Best,

Jim


> 
> If someone are willing to enlighten me I would be very greatful
> morten
> 
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-- 
James W. MacDonald
Affymetrix and cDNA Microarray Core
University of Michigan Cancer Center
1500 E. Medical Center Drive
7410 CCGC
Ann Arbor MI 48109
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