[BioC] annotate, htmlpage and othernames

[Morten Mattingsdal]

I updated to 1.5.16 and now it works!
thanks
morten

> Morten Mattingsdal wrote:
>
>> Hello,
>>
>> Im having some trouble with the htmlpage function in the package 
>> annotate. I want to import my top 100 list of probe ID's and use my 
>> annotation package to generate a html page. I am able to build the 
>> hyperlinks, but htmlpage will not paste the contents in "othernames" 
>> into the table.
>>
>> here is my code:
>> library(AgilentHuman1av2)
>> library(annotate)
>> id<-read.table("24t_probeid.txt", header=T)
>> probe<-as.matrix(id)
>> symbol <- getSYMBOL(probe,data="AgilentHuman1av2")
>> ll <- getLL(probe,data="AgilentHuman1av2")
>> res<-data.frame(probe,cbind(unlist(symbol)))
>> names(res)<-c("Probe ID","Gene Symbol")
>> htmlpage(ll,filename="ll.html",title="Test",othernames=res,table.head=c("LocusID",names(res)),table.center=TRUE) 
>>
>>
>> I am using R 2.1.0, Annotate 1.5.15 on Linux.
>
>
> I think this is due to a bug I recently fixed. Try upgrading to 
> annotate 1.5.16 and see if that helps.
>
> Best,
>
> Jim
>
>
>>
>> If someone are willing to enlighten me I would be very greatful
>> morten
>>
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>
>
>