[BioC] Building R packages

[James MacDonald]

You might also consider moving the package to a path that doesn't
contain spaces. Although this is supposedly not necessary these days, it
may be the cause of your problem.

Best,

Jim



>>> "michael watson (IAH-C)" <michael.watson at bbsrc.ac.uk> 6/21/2005
10:06:42 AM >>>
Hi

Did you use package.skeleton()?  I don't know if this will fix your
specific problem, but all I do is load up all the objects in R that I
want in my package, run package.skeleton, then create the docs and
everything is fine - I've certainly not seen those errors before...

Mick


-----Original Message-----
From:	bioconductor-bounces at stat.math.ethz.ch on behalf of E Motakis,
Mathematics
Sent:	Tue 21/06/2005 2:53 PM
To:	bioconductor at stat.math.ethz.ch 
Cc:	
Subject:	[BioC] Building R packages
Dear all

I am trying to build an R package in Windows 2000 that I want to upload
in 
Bioconductor. I have created the man and R folders with the appropriate

files inside and I use the command Rcmd check C:\...\roots to check
whether 
the package works properly, but the following problem appears:

-------------------------------------------------------
* using log directory 'C:/Program Files/R/rw2001/bin/roots.Rcheck'
* checking for file 'roots/DESCRIPTION' ... OK
* checking if this is a source package ... OK
* checking package directory ... OK
* checking for portable file names ... OK
* checking package dependencies ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for syntax errors ... OK
* checking R files for library.dynam ... OK
* checking S3 generic/method consistency ... WARNING
Error in .try_quietly({ : Error: Unable to load R code in package
'roots'
Execution halted
See section 'Generic functions and methods' of the 'Writing R
Extensions'
manual.
* checking replacement functions ... WARNING
Error in .try_quietly({ : Error: Unable to load R code in package
'roots'
Execution halted
In R, the argument of a replacement function which corresponds to the
right
hand side must be named 'value'.
* checking foreign function calls ... WARNING
Error in .try_quietly({ : Error: Unable to load R code in package
'roots'
Execution halted
See section 'System and foreign language interfaces' of the 'Writing R
Extensions' manual.
* checking Rd files ... OK
* checking for missing documentation entries ... ERROR
Error in .try_quietly({ : Error: Unable to load R code in package
'roots'
--------------------------------------------------------

Could someone tell how to correct for the warnings, please?

Regards,
Makis



----------------------
E Motakis, Mathematics
E.Motakis at bristol.ac.uk 

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