May 2007 Archives by author

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Starting: Tue May 1 00:13:38 CEST 2007
Ending: Thu May 31 23:05:22 CEST 2007
Messages: 464

• [BioC] Permutation of a data.frame   alex lam (RI)
• [BioC] Suggestions: process only a subset of affy data?   Cei Abreu-Goodger
• [BioC] Problem loading RdbiPgSQL   Thomas Adams
• [BioC] Problem loading RdbiPgSQL   Thomas Adams
• [BioC] Problem loading RdbiPgSQL   Thomas Adams
• [BioC] Problem loading RdbiPgSQL   Thomas Adams
• [BioC] Problem loading RdbiPgSQL   Thomas Adams
• [BioC] Problem loading RdbiPgSQL   Thomas Adams
• [BioC] Vignettes menu   Alejandro
• [BioC] hyperGTest   Naomi Altman
• [BioC] hyperGTest   Naomi Altman
• [BioC] hyperGTest   Naomi Altman
• [BioC] hyperGTest   Naomi Altman
• [BioC] dye effects stronger than dye-swaps?   Naomi Altman
• [BioC] Normalization across different tissues for Affymetrix Array   Naomi Altman
• [BioC] microarray: dealing with multi probes for one gene   Naomi Altman
• [BioC] Loop Design to Reference Design   Naomi Altman
• [BioC] questions about the details of RMA and MAS5 in Affy package   James Anderson
• [BioC] how to solve the memory problem in RMA if I want to get probe level expression?   James Anderson
• [BioC] how to do the following using justRMA in affy package?   James Anderson
• [BioC] about .632 + bootstrap estimator   James Anderson
• [BioC] problem with pamr.listgenes in pamr package   Alice LE BARS
• [BioC] ALERT: as sleep   Freddie Bentley
• [BioC] affyPLM and exon array question   Ben Bolstad
• [BioC] quantile normalization of one dataset to another   Ben Bolstad
• [BioC] ReadAffy Error: new versions causing problems?   Ben Bolstad
• [BioC] microarray: dealing with multi probes for one gene   Christophe Boutte
• [BioC] GOstats v2.2.3 . bug in inducedTermGraph   Pierre-Yves Boëlle
• [BioC] Affy EXON Array: iterPLIER or RMA   Daniel Brewer
• [BioC] Affy EXON Array: iterPLIER or RMA   Daniel Brewer
• [BioC] Is a change in kit significant?   Daniel Brewer
• [BioC] Is a change in kit significant?   Daniel Brewer
• [BioC] Labelling subplots a), b) etc.   Daniel Brewer
• [BioC] quantile normalization of one dataset to another   Daniel Brewer
• [BioC] quantile normalization of one dataset to another   Daniel Brewer
• [BioC] ATTENTION: by vibrant   Patty Brock
• [BioC] Problem using useMart with local DB   Alessandro Bruselles
• [BioC] ReadAffy Error: new versions causing problems?   Boel Brynedal
• [BioC] ReadAffy Error: new versions causing problems?   Boel Brynedal
• [BioC] Annbuilder for chicken data   Bart Buitenhuis
• [BioC] Annbuilder for chicken data   Bart Buitenhuis
• [BioC] questions about the details of RMA and MAS5 in Affy package   Stefano Calza
• [BioC] old version repository   Pedro Carmona
• [BioC] assigning phenoData via assign   Benilton Carvalho
• [BioC] assigning phenoData via assign   Benilton Carvalho
• [BioC] ReadAffy problem   Benilton Carvalho
• [BioC] quantile normalization of one dataset to another   Benilton Carvalho
• [BioC] Problem with snprma   Benilton Carvalho
• [BioC] Affy's 500K SNP arrays - retrieval of probe info   Benilton Carvalho
• [BioC] snprma for 500K array   Benilton Carvalho
• [BioC] Affy's 500K SNP arrays - retrieval of probe info   Benilton Carvalho
• [BioC] Help on beadarray   Haiming Chen
• [BioC] hyperGTest   Tony Chiang
• [BioC] [by the way of mj.nueda at ua.es] Time series & RT-PCR   Ana Conesa
• [BioC] Time series and RT-PCR   Ana Conesa
• [BioC] Help: longitudinal data   Ana Conesa
• [BioC] problem with pamr.listgenes in pamr package   Giovanni Coppola
• [BioC] "3D" hierarchical clustering question   Aedin Culhane
• [BioC] install Monograph problem   Daofeng.Li
• [BioC] install Monograph problem   Daofeng.Li
• [BioC] install Monograph problem   Daofeng.Li
• [BioC] install Monograph problem   Daofeng.Li
• [BioC] install Monograph problem   Daofeng.Li
• [BioC] install Monograph problem   Daofeng.Li
• [BioC] install Monograph problem   Daofeng.Li
• [BioC] what is the correct method to use AnnotatedDataFrame?   Daofeng.Li
• [BioC] fonts problem   Daofeng.Li
• [BioC] what is the correct method to use AnnotatedDataFrame?   Daofeng.Li
• [BioC] fonts problem   Daofeng.Li
• [BioC] Problem loading RdbiPgSQL   Sean Davis
• [BioC] Trouble with getGEO retrieving dataset   Sean Davis
• [BioC] Trouble with getGEO retrieving dataset   Sean Davis
• [BioC] help in 2-color data normalization   Jeremy Davis-Turak
• [BioC] affyPLM and exon array question   Allen Day
• [BioC] affyPLM and exon array question   Allen Day
• [BioC] affyPLM and exon array question   Allen Day
• [BioC] Affy's 500K SNP arrays - retrieval of probe info   De Bondt, An-7114 [PRDBE]
• [BioC] Affy's 500K SNP arrays - retrieval of probe info   De Bondt, An-7114 [PRDBE]
• [BioC] Affy's 500K SNP arrays - retrieval of probe info   De Bondt, An-7114 [PRDBE]
• [BioC] Limma - using both array and spot weights in lmFit   De-Jian,ZHAO
• [BioC] from using biomaRt and r10kcod   Diego Diez
• [BioC] dye effects stronger than dye-swaps?   Jenny Drnevich
• [BioC] workspace filename   Jenny Drnevich
• [BioC] Nimblegen data analysis   Jenny Drnevich
• [BioC] problem with duplicateCorrelation and ExpressionSet objects   Jenny Drnevich
• [BioC] problem with duplicateCorrelation and ExpressionSet objects   Jenny Drnevich
• [BioC] problem with duplicateCorrelation and ExpressionSet objects   Jenny Drnevich
• [BioC] problem with duplicateCorrelation and ExpressionSet objects   Jenny Drnevich
• [BioC] problem with duplicateCorrelation and ExpressionSet objects   Jenny Drnevich
• [BioC] problem with duplicateCorrelation and ExpressionSet objects   Jenny Drnevich
• [BioC] Problem in lumi   Pan Du
• [BioC] Beadarray   Mark Dunning
• [BioC] convert IMAGE Clone ID to Entrez Gene ID   Steffen Durinck
• [BioC] biomaRt - retrieve chrom location   Steffen Durinck
• [BioC] Problem using useMart with local DB   Steffen Durinck
• [BioC] Problems updating bioconductor   M. Gonzalo Claros Díaz
• [BioC] relocatable rpm R 1.9 for fc6.x86_84   D.Enrique ESCOBAR ESPINOZA
• [BioC] R memory overflow in my server   D.Enrique ESCOBAR ESPINOZA
• [BioC] R memory overflow in my server 2   D.Enrique ESCOBAR ESPINOZA
• [BioC] rflowcyt question   Byron Ellis
• [BioC] convert IMAGE Clone ID to Entrez Gene ID   João Fadista
• [BioC] biomaRt - retrieve chrom location   João Fadista
• [BioC] sliding window approach   João Fadista
• [BioC] MA-plot with print tip smooth curves   João Fadista
• [BioC] hyperGTest   Seth Falcon
• [BioC] limma read.maimages for scanarray express .csv files   Seth Falcon
• [BioC] GOstats: hyperGTest function   Seth Falcon
• [BioC] hyperGTest   Seth Falcon
• [BioC] limma read.maimages for scanarray express .csv files   Seth Falcon
• [BioC] AnnBuilder with custmerized GO annotation   Seth Falcon
• [BioC] Problems compiling RdbiPgSQL   Seth Falcon
• [BioC] Annbuilder for chicken data   Seth Falcon
• [BioC] GOstats After Running Lumi   Seth Falcon
• [BioC] Problem loading RdbiPgSQL   Seth Falcon
• [BioC] Problem loading RdbiPgSQL   Seth Falcon
• [BioC] Problem loading RdbiPgSQL   Seth Falcon
• [BioC] assigning phenoData via assign   Seth Falcon
• [BioC] How to access web link   Seth Falcon
• [BioC] HyperGTest Gene Universe problem   Seth Falcon
• [BioC] Problem loading RdbiPgSQL   Seth Falcon
• [BioC] Suggestions for upgrading BioC (was: ReadAffy problem)   Seth Falcon
• [BioC] Vignettes menu   Seth Falcon
• [BioC] install Monograph problem   Seth Falcon
• [BioC] GOstats, geneCounts and gene universe filtering...   Seth Falcon
• [BioC] install Monograph problem   Seth Falcon
• [BioC] how to do the following using justRMA in affy package?   Seth Falcon
• [BioC] Varmixt   Seth Falcon
• [BioC] GOstats, geneCounts and gene universe filtering...   Seth Falcon
• [BioC] GOstats, geneCounts and gene universe filtering...   Seth Falcon
• [BioC] tcl/tk and biocLite   Seth Falcon
• [BioC] Annbuilder for chicken data   Seth Falcon
• [BioC] Note in check report was: [Bioc-devel] Recent changes in R   Seth Falcon
• [BioC] Installing Bioconductor Packages   Seth Falcon
• [BioC] help for siggene installation   Seth Falcon
• [BioC] Bioconductor installation   Seth Falcon
• [BioC] R memory overflow in my server   Seth Falcon
• [BioC] relocatable rpm R 1.9 for fc6.x86_84   Seth Falcon
• [BioC] siggenes 1.10 na.handling   Seth Falcon
• [BioC] problem with duplicateCorrelation and ExpressionSet objects   Seth Falcon
• [BioC] mas5 update.default problem   Seth Falcon
• [BioC] mas5 update.default problem   Seth Falcon
• [BioC] mas5 update.default problem   Seth Falcon
• [BioC] help on AnnBuilder   Seth Falcon
• [BioC] problem with function rma   Seth Falcon
• [BioC] problem with function rma   Seth Falcon
• [BioC] problem with function rma   Seth Falcon
• [BioC] problem with function rma   Seth Falcon
• [BioC] Problems updating bioconductor   Seth Falcon
• [BioC] GOstats v2.2.3 . bug in inducedTermGraph   Seth Falcon
• [BioC] How to identify corrupt Affy CEL file?   Seth Falcon
• [BioC] matching affy ids from hgu95 to hgu133 (or any other combination)   Mayte Suarez Farinas
• [BioC] ReadAffy Error: new versions causing problems?   Julien Gagneur
• [BioC] ReadAffy Error: new versions causing problems?   Julien Gagneur
• [BioC] replication in continuous culture   Peadar Ó Gaora
• [BioC] help with metaArray package   Debashis Ghosh
• [BioC] using cutree() to figure out the labels of the left cluster on a heatmap   Thomas Girke
• [BioC] using cutree() to figure out the labels of the left cluster on a heatmap   Thomas Girke
• [BioC] Van de Vijver dataset probe sequences   Michael Gormley
• [BioC] Building the tomato annotation library(Affy)   Groot, Philip de
• [BioC] Building the tomato annotation library(Affy)   Groot, Philip de
• [BioC] Bug in featureNames() in R-2.5.0 / BioC 2.0?   Groot, Philip de
• [BioC] limma Question: Design matrix for imperfectly paired samples   Xia Han
• [BioC] globaltest Question: Error message with pairwise design?   Xia Han
• [BioC] how to solve the memory problem in RMA if I want to get probe level expression?   Kasper Daniel Hansen
• [BioC] fonts problem   Kasper Daniel Hansen
• [BioC] marray to ExpressionSet   Johanna Hardin
• [BioC] siggenes 1.10 na.handling   He, Yiwen (NIH/CIT) [C]
• [BioC] Limma - using both array and spot weights in lmFit   Jakob Hedegaard
• [BioC] ReadAffy problem   Stephen Henderson
• [BioC] ReadAffy problem   Stephen Henderson
• [BioC] about .632 + bootstrap estimator   Stephen Henderson
• [BioC] snprma for 500K array   Brandon Higgs
• [BioC] snprma for 500K array   Brandon Higgs
• [BioC] How to identify corrupt Affy CEL file?   Hooiveld, Guido
• [BioC] c version of VSN ? and Wolfgang's answer   Wolfgang Huber
• [BioC] VSN 2.2   Wolfgang Huber
• [BioC] c version of VSN ? and Wolfgang's answer   Wolfgang Huber
• [BioC] VSN 2.2   Wolfgang Huber
• [BioC] design matrix   Wolfgang Huber
• [BioC] design matrix   Wolfgang Huber
• [BioC] ReadAffy Error: new versions causing problems?   Wolfgang Huber
• [BioC] vsn2 bug?   Wolfgang Huber
• [BioC] vsn2 bug?   Wolfgang Huber
• [BioC] Using Top Table to extract gene info from additional table within   RS Illingworth
• [BioC] help in 2-color data normalization   Jianping Jin
• [BioC] R: help in 2-color data normalization   Jianping Jin
• [BioC] help in 2-color data normalization   Jianping Jin
• [BioC] help in 2-color data normalization   Jianping Jin
• [BioC] help in 2-color data normalization   Jianping Jin
• [BioC] HyperGTest Gene Universe problem   Vivek Kaimal
• [BioC] Help with normalization   Olga K. Kamneva
• [BioC] help with metaArray package   Olga K. Kamneva
• [BioC] help with metaArray package   Olga K. Kamneva
• [BioC] pData function   Max Kauer
• [BioC] dye effects stronger than dye-swaps?   Narendra Kaushik
• [BioC] limma Common Reference Analysis.   Khan, Sohail
• [BioC] limma Common Reference Analysis   Khan, Sohail
• [BioC] VSN 2.2   Hans-Ulrich Klein
• [BioC] VSN 2.2   Hans-Ulrich Klein
• [BioC] VSN 2.2   Hans-Ulrich Klein
• [BioC] Question about Yeast Microarray   Ajit Kulkarni
• [BioC] ADVERTISEMENT: statistical programmer position available, Boston   Ross Lazarus
• [BioC] Interaction terms on a factorial design without a reference sample   Bernardo Lemos
• [BioC] LumiMouseV1 error   Paul Leo
• [BioC] GOstats After Running Lumi   Paul Leo
• [BioC] webbioc upload second .cel file problem   Daofeng Li
• [BioC] how to find the children identifiers of a specific KEGG identifier in R??   Li, Hua
• [BioC] AnnBuilder with custmerized GO annotation   Nianhua Li
• [BioC] bug with AnnBuilder and parser   Nianhua Li
• [BioC] Building the tomato annotation library(Affy)   Nianhua Li
• [BioC] Re : bug with AnnBuilder and parser   Nianhua Li
• [BioC] Building the tomato annotation library(Affy)   Nianhua Li
• [BioC] Re : bug with AnnBuilder and parser   Nianhua Li
• [BioC] help on AnnBuilder   Nianhua Li
• [BioC] Problem useing lumi addNuId2lumi   Danilo Licastro
• [BioC] problem with function rma   Juan Lin
• [BioC] problem with function rma   Juan Lin
• [BioC] Illumina BeadArray Annotation   Simon Lin
• [BioC] affy package: accessing the mas5 scale factors   Fenglong Liu
• [BioC] c version of VSN ? and Wolfgang's answer   Roger Liu
• [BioC] c version of VSN ? and Wolfgang's answer   Roger Liu
• [BioC] exon array QC   Liu, Xin
• [BioC] Varmixt   Efthimios MOTAKIS
• [BioC] Barley cdf   James MacDonald
• [BioC] sample size   James W. MacDonald
• [BioC] questions about the details of RMA and MAS5 in Affy package   James W. MacDonald
• [BioC] Affy TilingArray makePDpackage   James W. MacDonald
• [BioC] Affy TilingArray makePDpackage   James W. MacDonald
• [BioC] eBayes warning: zero sample variances   James W. MacDonald
• [BioC] error in annaffy   James W. MacDonald
• [BioC] GOstats After Running Lumi   James W. MacDonald
• [BioC] Affy EXON Array: iterPLIER or RMA   James W. MacDonald
• [BioC] how to solve the memory problem in RMA if I want to get probe level expression?   James W. MacDonald
• [BioC] Affy EXON Array: iterPLIER or RMA   James W. MacDonald
• [BioC] Affy EXON Array: iterPLIER or RMA   James W. MacDonald
• [BioC] Gostats question   James W. MacDonald
• [BioC] how to do the following using justRMA in affy package?   James W. MacDonald
• [BioC] Limma Script   James W. MacDonald
• [BioC] Is a change in kit significant?   James W. MacDonald
• [BioC] biomaRt - retrieve chrom location   James W. MacDonald
• [BioC] from using biomaRt and r10kcod   James W. MacDonald
• [BioC] from using biomaRt and r10kcod   James W. MacDonald
• [BioC] Is a change in kit significant?   James W. MacDonald
• [BioC] old version repository   James W. MacDonald
• [BioC] Differential expression in time series   James W. MacDonald
• [BioC] Differential expression in time series   James W. MacDonald
• [BioC] rma for different conditions   James W. MacDonald
• [BioC] gcrma and combineAffyBatch   James W. MacDonald
• [BioC] ReadAffy Error: new versions causing problems?   James W. MacDonald
• [BioC] siggenes 1.10 na.handling   James W. MacDonald
• [BioC] output of coxfilter function in genefilter package   James W. MacDonald
• [BioC] problem with function rma   James W. MacDonald
• [BioC] quantile normalization of one dataset to another   Claus-Dieter Mayer
• [BioC] problem with function rma   Steven McKinney
• [BioC] Reminder: Tutorials and Free Software Session at CompLife 2007   Thorsten Meinl
• [BioC] problem with MANOR   Ballardini Michela
• [BioC] MANOR package, sumarray.factor problem   Ballardini Michela
• [BioC] MANOR: information about id.rep   Ballardini Michela
• [BioC] affyPLM and exon array question   Crispin Miller
• [BioC] Affy EXON Array: iterPLIER or RMA   Crispin Miller
• [BioC] simpleaffy plot error   Crispin Miller
• [BioC] read.maimages problem under sun ?   Amin Moghaddasi
• [BioC] read.maimages problem under sun ?   Amin Moghaddasi
• [BioC] Loop Design to Reference Design   Amin Moghaddasi
• [BioC] Trouble with getGEO retrieving dataset   Saroj Mohapatra
• [BioC] Use of pData in assignments   Martin Morgan
• [BioC] BioC2007 Proposals for Practicals due May 13   Martin Morgan
• [BioC] assigning phenoData via assign   Martin Morgan
• [BioC] How to access web link   Martin Morgan
• [BioC] Question on AnnBuilder (on Windows and Linux)   Martin Morgan
• [BioC] what is the correct method to use AnnotatedDataFrame?   Martin Morgan
• [BioC] Question on AnnBuilder (on Windows and Linux)   Martin Morgan
• [BioC] RMA warning message about missing se.exprs   Martin Morgan
• [BioC] Bug in featureNames() in R-2.5.0 / BioC 2.0?   Martin Morgan
• [BioC] 'AnnotatedDataFrame' and featureNames'   Martin Morgan
• [BioC] problem with function rma   Martin Morgan
• [BioC] load the annotation package generated by AnnBuilder   Martin Morgan
• [BioC] problems with MANOR   James Morris
• [BioC] MANOR and MySQL   James Morris
• [BioC] filtering on external genelist   Oleg Moskvin
• [BioC] Problem with snprma   OLIVIER NUÑEZ
• [BioC] samr error   Tarun Nayar
• [BioC] snapCGH package   Vincent Negre
• [BioC] MANOR and MySQL   Pierre Neuvial
• [BioC] MANOR and MySQL   Pierre Neuvial
• [BioC] MANOR: information about id.rep   Pierre Neuvial
• [BioC] Problem with snprma (2)   Olivier Nuñez
• [BioC] Time series and RT-PCR   Ochsner, Scott A
• [BioC] Affy EXON Array: iterPLIER or RMA   Michal Okoniewski
• [BioC] simpleaffy plot error   Georg Otto
• [BioC] Universal binaries for BioC 2.0 are available   Herve Pages
• [BioC] Problem loading RdbiPgSQL   Herve Pages
• [BioC] old version repository   Herve Pages
• [BioC] Permutation of a data.frame   Herve Pages
• [BioC] Universal binaries for BioC 2.0 are available   Herve Pages
• [BioC] Analyzing single-channel genepix data from Genepix in Limma   Lance E. Palmer
• [BioC] gcrma and combineAffyBatch   Michael Palumbo
• [BioC] gcrma and combineAffyBatch   Michael Palumbo
• [BioC] text.to.search problem in read.maimages   Park-Ng, Zaneta
• [BioC] Installing Bioconductor Packages   Park-Ng, Zaneta
• [BioC] Time series and RT-PCR   Richard Pearson
• [BioC] AnnBuilder with custmerized GO annotation   Xinxia Peng
• [BioC] AnnBuilder with custmerized GO annotation   Xinxia Peng
• [BioC] AnnBuilder with custmerized GO annotation   Xinxia Peng
• [BioC] Is a change in kit significant?   Francois Pepin
• [BioC] how to find the children identifiers of a specific KEGG identifier in R??   Francois Pepin
• [BioC] how to find the children identifiers of a specific KEGGidentifier in R??   Francois Pepin
• [BioC] microarray: dealing with multi probes for one gene   Francois Pepin
• [BioC] ALERT: an phone   Thelma Pickens
• [BioC] [OT] compatible preprocessing for Affy and non-Affy   Adaikalavan Ramasamy
• [BioC] Problem in lumi   Longsi Ran
• [BioC] Workflow question in lumi   Longsi Ran
• [BioC] Nimblegen data analysis   Todd Richmond
• [BioC] Help on beadarray   Matt Ritchie
• [BioC] Help on beadarray   Matt Ritchie
• [BioC] Outlier removal in Beadarray bead level data analysis   Matt Ritchie
• [BioC] affxparser compile error on mac   Mark Robinson
• [BioC] matching affy ids from hgu95 to hgu133 (or any other combination)   Mark Robinson
• [BioC] Differential expression in time series   Peter Robinson
• [BioC] plier   Marie-Paule Roth
• [BioC] Time series and RT-PCR   David Ruau
• [BioC] (no subject)   David Ruau
• [BioC] mas5 update.default problem   David Ruau
• [BioC] mas5 update.default problem   David Ruau
• [BioC] mas5 update.default problem   David Ruau
• [BioC] mas5 update.default problem   David Ruau
• [BioC] GOstats, geneCounts and gene universe filtering...   Jesper Ryge
• [BioC] GOstats, geneCounts and gene universe filtering...   Jesper Ryge
• [BioC] GOstats, geneCounts and gene universe filtering...   Jesper Ryge
• [BioC] Help: longitudinal data   Narinder Singh Sahni
• [BioC] Installing Bioconductor Packages   Pia Sappl
• [BioC] Preferred RDBMS   Marc Saric
• [BioC] affylmGUI   Keith Satterley
• [BioC] limma: print-tip loess and empty spots   Keith Satterley
• [BioC] eBayes warning: zero sample variances   Matthew Scholz
• [BioC] Permutation of a data.frame   Paul Christoph Schröder
• [BioC] problem with list.siggenes in siggenes package   Holger Schwender
• [BioC] siggenes 1.10 na.handling   Holger Schwender
• [BioC] limma question: direct two-color design & modeling individual subject effects   Paul Shannon
• [BioC] limma eBayes: how to determine goodness of fit?   Paul Shannon
• [BioC] normalize.loess - warning message about convergence   Sharon
• [BioC] Outlier removal in Beadarray bead level data analysis   Wei Shi
• [BioC] GPL1820   Weiwei Shi
• [BioC] from using biomaRt and r10kcod   Weiwei Shi
• [BioC] from using biomaRt and r10kcod   Weiwei Shi
• [BioC] from using biomaRt and r10kcod   Weiwei Shi
• [BioC] scale between two independent arrays   Weiwei Shi
• [BioC] Problems compiling RdbiPgSQL   Albert Vernon Smith
• [BioC] Problems compiling RdbiPgSQL   Albert Vernon Smith
• [BioC] text.to.search problem in read.maimages   Gordon Smyth
• [BioC] text.to.search problem in read.maimages   Gordon Smyth
• [BioC] limma question: direct two-color design & modeling individual subject effects   Gordon Smyth
• [BioC] limma question: direct two-color design & modeling individual subject effects   Gordon Smyth
• [BioC] paired design, LIMMA   Gordon Smyth
• [BioC] plotMA   Gordon Smyth
• [BioC] limma Question: Design matrix for imperfectly paired samples   Gordon Smyth
• [BioC] Analyzing single-channel genepix data from Genepix in Limma   Gordon Smyth
• [BioC] problem with duplicateCorrelation and ExpressionSet objects   Gordon Smyth
• [BioC] plotMA in LIMMA   Gordon Smyth
• [BioC] limma Common Reference Analysis.   Gordon Smyth
• [BioC] design matrix   Gordon Smyth
• [BioC] problem with duplicateCorrelation and ExpressionSet objects   Gordon Smyth
• [BioC] problem with duplicateCorrelation and ExpressionSet objects   Gordon Smyth
• [BioC] different paired designs   Gordon Smyth
• [BioC] limma question: direct two-color design & modeling individual subject effects   Gordon K Smyth
• [BioC] Limma - using both array and spot weights in lmFit   Gordon K Smyth
• [BioC] limma read.maimages for scanarray express .csv files   Gordon K Smyth
• [BioC] paired design, LIMMA   Gordon K Smyth
• [BioC] limma reading Agilent One-Color Data   Gordon K Smyth
• [BioC] problem with duplicateCorrelation and ExpressionSet objects   Gordon K Smyth
• [BioC] limma: print-tip loess and empty spots   Gordon K Smyth
• [BioC] problem with duplicateCorrelation and ExpressionSet objects   Gordon K Smyth
• [BioC] sample size   Lev Soinov
• [BioC] sample size   Lev Soinov
• [BioC] paired design, LIMMA   Lev Soinov
• [BioC] paired design, LIMMA   Lev Soinov
• [BioC] LIMMA   Lev Soinov
• [BioC] LIMMA   Lev Soinov
• [BioC] LIMMA   Lev Soinov
• [BioC] plotMA   Lev Soinov
• [BioC] plotMA   Lev Soinov
• [BioC] plotMA in LIMMA   Lev Soinov
• [BioC] Differential expression in time series   Lev Soinov
• [BioC] design matrix   Lev Soinov
• [BioC] design matrix   Lev Soinov
• [BioC] design matrix   Lev Soinov
• [BioC] Barley cdf   Lev Soinov
• [BioC] different paired designs   Lev Soinov
• [BioC] barley cdf   Lev Soinov
• [BioC] flagged spots in marray   Juan Pedro Steibel
• [BioC] flagged spots in marray   Juan Pedro Steibel
• [BioC] limma: print-tip loess and empty spots   Adrian Steward
• [BioC] limma: print-tip loess and empty spots   Adrian Steward
• [BioC] limma: print-tip loess and empty spots   Adrian Steward
• [BioC] vsn2 bug?   Tobias Straub
• [BioC] vsn2 bug?   Tobias Straub
• [BioC] error in annaffy   Mayte Suarez-Farinas
• [BioC] Labelling subplots a), b) etc.   Joern Toedling
• [BioC] Question on AnnBuilder (on Windows and Linux)   Alex Tsoi
• [BioC] Question on AnnBuilder (on Windows and Linux)   Alex Tsoi
• [BioC] 9 Courses: Upcoming July 2007 R/S+ schedule by XLSolutions Corp   Sue Turner
• [BioC] rflowcyt question   Steven Wanyee
• [BioC] rflowcyt question   Steven Wanyee
• [BioC] Preferred RDBMS   Steven Wanyee
• [BioC] JOB: Biostatistician/Statistical Programmer/Data Analyst   Gregory Warnes
• [BioC] affylmGUI   Anke Wendschlag
• [BioC] LumiMouseV1 error   Shawn Westaway
• [BioC] GOstats After Running Lumi   Shawn Westaway
• [BioC] LumiMouseV1 error   Shawn Westaway
• [BioC] GOstats After Running Lumi   Shawn Westaway
• [BioC] Limma Script   Shawn Westaway
• [BioC] workspace filename   Shawn Westaway
• [BioC] workspace filename   Shawn Westaway
• [BioC] load the annotation package generated by AnnBuilder   Di Wu
• [BioC] load the annotation package generated by AnnBuilder   Di Wu
• [BioC] Open position   Shujian Wu
• [BioC] simpleaffy problem - drosophila2   Yihuan Xu
• [BioC] MA-plot with print tip smooth curves   Jean Yee Hwa Yang
• [BioC] using cutree() to figure out the labels of the left cluster on a heatmap   Andrew Yee
• [BioC] using cutree() to figure out the labels of the left cluster on a heatmap   Andrew Yee
• [BioC] using cutree() to figure out the labels of the left cluster on a heatmap   Andrew Yee
• [BioC] AnnBuilder with custmerized GO annotation   John Zhang
• [BioC] help on AnnBuilder   Pan Zheng
• [BioC] How to access web link   Weiyin Zhou
• [BioC] Gostats question   Zhu, Dongxiao
• [BioC] "3D" hierarchical clustering question   phguardiol at aol.com
• [BioC] 'AnnotatedDataFrame' and featureNames'   diego arcelli
• [BioC] limma read.maimages for scanarray express .csv files   sltucker at artsci.wustl.edu
• [BioC] snapCGH package   ma3mls at bath.ac.uk
• [BioC] problems with MANOR   J.delasHeras at ed.ac.uk
• [BioC] help in 2-color data normalization   J.delasHeras at ed.ac.uk
• [BioC] help in 2-color data normalization   J.delasHeras at ed.ac.uk
• [BioC] how to do quantile normalization under dye swape situation   J.delasHeras at ed.ac.uk
• [BioC] problem with MANOR   J.delasHeras at ed.ac.uk
• [BioC] workspace filename   J.delasHeras at ed.ac.uk
• [BioC] Nimblegen data analysis   J.delasHeras at ed.ac.uk
• [BioC] test - ignore   J.delasHeras at ed.ac.uk
• [BioC] MA-plot with print tip smooth curves   J.delasHeras at ed.ac.uk
• [BioC] Limma Design   J.delasHeras at ed.ac.uk
• [BioC] Use of pData in assignments   Edwards.Stephen at epamail.epa.gov
• [BioC] rma for different conditions   MaximilianOtto at gmx.at
• [BioC] LAST ANNOUNCEMENT: CSAMA'07 [COURSE]   stefano iacus
• [BioC] affy technical vs biological replicates analysis   jane janes
• [BioC] Affy TilingArray makePDpackage   joseph
• [BioC] Limma Design   claudio.is at libero.it
• [BioC] Vignettes menu   J.Oosting at lumc.nl
• [BioC] workspace filename   morten mattingsdal
• [BioC] RMA warning message about missing se.exprs   caiwei at mdanderson.org
• [BioC] Using Top Table to extract gene info from additional tablewithin   r.athanasiadou
• [BioC] Labelling subplots a), b) etc.   r.athanasiadou
• [BioC] help for siggene installation   ruma
• [BioC] Bioconductor installation   ruma
• [BioC] problem with list.siggenes in siggenes package   ruma
• [BioC] tcl/tk and biocLite   toedt
• [BioC] tcl/tk dependency of biocLite   toedt
• [BioC] Trouble with getGEO retrieving dataset   smohapat at vbi.vt.edu
• [BioC] Trouble with getGEO retrieving dataset   smohapat at vbi.vt.edu
• [BioC] bug with AnnBuilder and parser   gregory voisin
• [BioC] output of coxfilter function in genefilter package   carol white
• [BioC] how to do quantile normalization under dye swape situation   yanju
• [BioC] Normalization across different tissues for Affymetrix Array   shirley zhang
• [BioC] Bug in mt.sample.rawp (multtest), R 2.4.1,   shirley zhang
• [BioC] Annotating HGU133plus2 genes with number of coding changes   marco zucchelli
• [BioC] Filtering Illumina data?   Ingrid H. G. Østensen

Last message date: Thu May 31 23:05:22 CEST 2007
Archived on: Thu May 31 23:05:44 CEST 2007

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