[BioC] error in annaffy

[James W. MacDonald]

Hi Mayte,

Mayte Suarez-Farinas wrote:
> Hi, I got an error in annaffy function that I use a lot.
> I installed R 2.5  and all BioC package but still got the same error
> 
> anntable <- aafTableAnn(probesids, "hgu133a2", anncols)
> Warning message:
> This environment never contains any data, and will be removed in the  
> next release.
> 
> Any Idea about what is going on ??

First, that is _not_ an error, but a warning. There is a big difference.

Anyway, the warning comes from the hgu133a2SUMFUNC environment:

 > get(probids[1], hgu133a2SUMFUNC)
[1] NA
Warning message:
This environment never contains any data, and will be removed in the 
next release.

Which pretty much sums it all up, yes?

Best,

Jim


> 
> _______________________________________________
> Bioconductor mailing list
> Bioconductor at stat.math.ethz.ch
> https://stat.ethz.ch/mailman/listinfo/bioconductor
> Search the archives: http://news.gmane.org/gmane.science.biology.informatics.conductor


-- 
James W. MacDonald, M.S.
Biostatistician
Affymetrix and cDNA Microarray Core
University of Michigan Cancer Center
1500 E. Medical Center Drive
7410 CCGC
Ann Arbor MI 48109
734-647-5623


**********************************************************
Electronic Mail is not secure, may not be read every day, and should not be used for urgent or sensitive issues.