[BioC] snapCGH package

[ma3mls at bath.ac.uk]

Hi,

It looks like a problem with loading the shared object.  I presume you are using a Linux or 
Mac system.  Have you compiled the package from source or downloaded the precompiled 
version?  If you've got the precompiled version then the C code is compiled into a dll rather 
than a shared object, and your system won't be able to open it.

Mike Smith

On 25 May 2007 at 15:39, Vincent Negre wrote:

> Hello, 
> I can' t use the package snapCGH. Here is the error output. There is a problem with snapCGH.so library.
> 
> Somebody knows how to fix this problem.
> 
> Your help will be greatly appreciated.
> 
> Thank you.
> 
> Vincent.
> 
> PS: I'm using R version 2.5.0 on Mac OS X.
> 
> > library(snapCGH)
> Le chargement a nécessité le package : tilingArray
> Le chargement a nécessité le package : affy
> Le chargement a nécessité le package : affyio
> Le chargement a nécessité le package : RColorBrewer
> Le chargement a nécessité le package : grid
> Le chargement a nécessité le package : strucchange
> Le chargement a nécessité le package : zoo
> 
> Attachement du package : 'zoo'
> 
> 
>     The following object(s) are masked from package:base :
> 
>      rapply 
> 
> Le chargement a nécessité le package : sandwich
> Le chargement a nécessité le package : vsn
> Le chargement a nécessité le package : genefilter
> 
> Attachement du package : 'genefilter'
> 
> 
>     The following object(s) are masked from package:MANOR :
> 
>      cv 
> 
> Le chargement a nécessité le package : geneplotter
> Le chargement a nécessité le package : annotate
> Le chargement a nécessité le package : lattice
> KernSmooth 2.22 installed
> Copyright M. P. Wand 1997
> Le chargement a nécessité le package : pixmap
> 
> Attachement du package : 'tilingArray'
> 
> 
>     The following object(s) are masked from package:DNAcopy :
> 
>      segment 
> 
> Error in dyn.load(x, as.logical(local), as.logical(now)) : 
>     impossible de charger la bibliothèque partagée '/Library/Frameworks/R.framework/Versions/2.5/Resources/library/snapCGH/libs/ppc/snapCGH.so':
>   dlopen(/Library/Frameworks/R.framework/Versions/2.5/Resources/library/snapCGH/libs/ppc/snapCGH.so, 6): Library not loaded: /Library/Frameworks/R.framework/Versions/2.3/Resources/lib/libR.dylib
>   Referenced from: /Library/Frameworks/R.framework/Versions/2.5/Resources/library/snapCGH/libs/ppc/snapCGH.so
>   Reason: image not found
> Erreur dans library(snapCGH) : .First.lib a échoué pour 'snapCGH'
> Error in dyn.unload(x) : la bibliothèque dynamique / partagée '/Library/Frameworks/R.framework/Versions/2.5/Resources/library/snapCGH/libs/snapCGH.so' n'a pas été chargée
> 
>              
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