September 2008 Archives by subject

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Starting: Mon Sep 1 12:33:10 CEST 2008
Ending: Tue Sep 30 23:22:59 CEST 2008
Messages: 399

• [BioC] 3 Courses*** R/Splus Fundamentals and Programming Techniques: September 2008 at 3 locations by XLSolutions Corp   sue at xlsolutions-corp.com
• [BioC] [ANNOUNCE] Shouton.com v1.3b Released   Josh Rhodes
• [BioC] a couple of questions on PGSEA package and GSEA   Weiwei Shi
• [BioC] a couple of questions on PGSEA package and GSEA   Furge, Kyle
• [BioC] a couple of questions on PGSEA package and GSEA   Weiwei Shi
• [BioC] a couple of questions on PGSEA package and GSEA   Furge, Kyle
• [BioC] About ArrayExpress MAGE-TAB tools   Jenny Drnevich
• [BioC] About ArrayExpress MAGE-TAB tools   Sean Davis
• [BioC] about multi-platforms genechip   jiabao xu
• [BioC] about multi-platforms genechip   Sean Davis
• [BioC] affycoretools limma2annaffy output questions   Hui-Yi Chu
• [BioC] affycoretools limma2annaffy output questions   James W. MacDonald
• [BioC] Affymetrix Yeast Tiling Arrays   Paco Recca
• [BioC] Affymetrix Yeast Tiling Arrays   Steve Lianoglou
• [BioC] Agilent Feature extraction 10.1.1 warning   Gogol, Madelaine
• [BioC] Agilent Human Genome CGH 44K annotation   Daniel Brewer
• [BioC] Agilent Human Genome CGH 44K annotation   Sean Davis
• [BioC] Arguments to getGEO?   Thomas Hampton
• [BioC] Arguments to getGEO?   Sean Davis
• [BioC] arrayQualityMetrics - how do I use this with an MAList object???   Park-Ng, Zaneta
• [BioC] arrayQualityMetrics - how do I use this with an MAList object???   Martin Morgan
• [BioC] arrayQualityMetrics - how do I use this with an MAList object???   Marcus Davy
• [BioC] arrayQualityMetrics, Outlier   Yisong Zhen
• [BioC] arrayQualityMetrics, Outlier   audrey at ebi.ac.uk
• [BioC] Assess inter-study consistency   Ochsner, Scott A
• [BioC] Assess inter-study consistency   Thomas Hampton
• [BioC] Balanced Block design in LIMMA   Erika Melissari
• [BioC] Balanced Block design in LIMMA   Gordon K Smyth
• [BioC] Balanced Block design in LIMMA   Gordon K Smyth
• [BioC] biobase phenodata   hemant ritturaj
• [BioC] biobase phenodata   Sean Davis
• [BioC] biobase phenodata   hemant ritturaj
• [BioC] biobase phenodata   Sean Davis
• [BioC] Bioconductor and sequencing   Robert Gentleman
• [BioC] Bioconductor and sequencing   Ido M. Tamir
• [BioC] biomart doesn't annotate all the genes queried -CEACAM6   Julian Lee
• [BioC] biomart doesn't annotate all the genes queried -CEACAM6   Marc Carlson
• [BioC] biomart doesn't annotate all the genes queried -CEACAM6   Julian Lee
• [BioC] biomaRt getLDS command   Sergii Ivakhno
• [BioC] Bizarre artifacts in MA plots for ChIP-chip data   Steve Lianoglou
• [BioC] Bizarre artifacts in MA plots for ChIP-chip data   Henrik Bengtsson
• [BioC] Bizarre artifacts in MA plots for ChIP-chip data   Steve Lianoglou
• [BioC] black lokal lädt dich zu den lokalisten ein.   friends at lokalisten.de
• [BioC] book: Bioinformatics and Computational Biology Solutions ...   A.I. McLeod
• [BioC] book: Bioinformatics and Computational Biology Solutions ...   Patrick Aboyoun
• [BioC] book: Bioinformatics and Computational Biology Solutions ...   Robert Gentleman
• [BioC] CAMDA08 Announcement   Ana Conesa
• [BioC] can LIMMA deal with count data?   Milena Gongora
• [BioC] can LIMMA deal with count data?   Mark Robinson
• [BioC] can LIMMA deal with count data?   Bjoern Usadel
• [BioC] Can't download GEOmetadb.sqlite.gz   Kort, Eric
• [BioC] Can't download GEOmetadb.sqlite.gz   Sean Davis
• [BioC] Category for Illumina transcripts   Lana Schaffer
• [BioC] CEL files of ALL data set   Talloen, Willem [PRDBE]
• [BioC] cellHTS2 - 2 channel batch analysis   Steve Taylor
• [BioC] compiler for R running bioconductor   Ruppert Valentino
• [BioC] compiler for R running bioconductor   Sean Davis
• [BioC] compiler for R running bioconductor   Richard Pearson
• [BioC] compiler for R running bioconductor   Ruppert Valentino
• [BioC] compiler for R running bioconductor   STKH (Steen Krogsgaard)
• [BioC] compiler for R running bioconductor   Patrick Aboyoun
• [BioC] contrast matrix in LIMMA   Erika Melissari
• [BioC] contrast matrix in LIMMA   Erika Melissari
• [BioC] contrast matrix in LIMMA   Jenny Drnevich
• [BioC] Converting EnSeMBL Probe names into Gene Name   Gundala Viswanath
• [BioC] Converting EnSeMBL Probe names into Gene Name   Sean Davis
• [BioC] Converting EnSeMBL Probe names into Gene Name   James W. MacDonald
• [BioC] Converting EnSeMBL Probe names into Gene Name   Hooiveld, Guido
• [BioC] Converting EnSeMBL Probe names into Gene Name   Sean Davis
• [BioC] Correct p-value in GSA (Gene set enrichment) permutation tests? [Scanned.]   Dirk Repsilber
• [BioC] Courses*** R+/Splus (1) Fundamentals - (2) Advanced Programming : October 2008 at 3 locations by XLSolutions Corp   sue at xlsolutions-corp.com
• [BioC] CSIE 2009, Los Angeles, Papers/Abstracts: September 30   Hongping Wu
• [BioC] Custom annotation for a package in development?   Nathan Harmston
• [BioC] Custom annotation for a package in development?   Marc Carlson
• [BioC] Custom annotation for a package in development?   Robert Gentleman
• [BioC] Data consisting of several groups, persons, and cells   Seungwoo Hwang
• [BioC] dChip LOH and copy number analysis   Yu Chuan Tai
• [BioC] dChip LOH and copy number analysis   Henrik Bengtsson
• [BioC] dChip LOH and copy number analysis   Henrik Bengtsson
• [BioC] dChip LOH and copy number analysis   Yu Chuan Tai
• [BioC] dChip LOH and copy number analysis   Henrik Bengtsson
• [BioC] dChip LOH and copy number analysis   Yu Chuan Tai
• [BioC] Definition of the CellHTS2 normalizePlates parameter scale   Elin
• [BioC] Definition of the CellHTS2 normalizePlates parameter scale   c.lieftink at nki.nl
• [BioC] Definition of the CellHTS2 normalizePlates parameter scale   c.lieftink at nki.nl
• [BioC] Deposit Alert   Westpac
• [BioC] display many forest plots together   carol white
• [BioC] DNASuffixArray   Gabriel Valiente
• [BioC] DNASuffixArray   Herve Pages
• [BioC] Drawing induced GO graphs   daniel jupiter
• [BioC] Drawing induced GO graphs   Wolfgang Huber
• [BioC] Drawing induced GO graphs   Elliot Kleiman
• [BioC] Drawing induced GO graphs   daniel jupiter
• [BioC] Drawing induced GO graphs -- GOstats package   Wolfgang Huber
• [BioC] Drawing induced GO graphs -- GOstats package   daniel jupiter
• [BioC] Drawing induced GO graphs -- GOstats package   Seth Falcon
• [BioC] Drawing induced GO graphs -- GOstats package   daniel jupiter
• [BioC] Encountering error when using GOstats package   Rich Savage
• [BioC] Encountering error when using GOstats package   Vincent Carey 525-2265
• [BioC] Encountering error when using GOstats package   Rich Savage
• [BioC] Encountering error when using GOstats package   Vincent Carey 525-2265
• [BioC] Encountering error when using GOstats package   Robert Gentleman
• [BioC] Encountering error when using GOstats package   Robert Gentleman
• [BioC] Ensembl IDs 2 GO term enrichment --> simple solution without biomart? ( I can't install it because of RCurl)   Sean Davis
• [BioC] Ensembl IDs 2 GO term enrichment --> simple solution without biomart? ( I can't install it because of RCurl)   Emmanuel Levy
• [BioC] Ensembl IDs 2 GO term enrichment --> simple solution without biomart? ( I can't install it because of RCurl)   Emmanuel Levy
• [BioC] Ensembl IDs 2 GO term enrichment --> simple solution without biomart? ( I can't install it because of RCurl)   Emmanuel Levy
• [BioC] Ensembl IDs 2 GO term enrichment --> simple solution without biomart? ( I can't install it because of RCurl)   Emmanuel Levy
• [BioC] Ensembl IDs 2 GO term enrichment --> simple solution without biomart? ( I can't install it because of RCurl)   Emmanuel Levy
• [BioC] Ensembl IDs 2 GO term enrichment --> simple solution withoutbiomart? ( I can't install it because of RCurl)   michael watson (IAH-C)
• [BioC] Ensembl IDs 2 GO term enrichment --> simple solution withoutbiomart? ( I can't install it because of RCurl)   michael watson (IAH-C)
• [BioC] Ensembl IDs 2 GO term enrichment --> simple solution without biomart? ( I can't install it because of RCurl)   Emmanuel Levy
• [BioC] Ensembl IDs 2 GO term enrichment --> simple solution without biomart? ( I can't install it because of RCurl)   Robert Gentleman
• [BioC] Ensembl IDs 2 GO term enrichment --> simple solution without biomart? ( I can't install it because of RCurl)   Robert Gentleman
• [BioC] Ensembl IDs 2 GO term enrichment --> simple solution without biomart? ( I can't install it because of RCurl)   Robert Gentleman
• [BioC] error calculating alpha in edgeR   Milena Gongora
• [BioC] error calculating alpha in edgeR   Mark Robinson
• [BioC] F tests of covariates in maanova   Kristen K Dang
• [BioC] Finding Annotation of CEL file formats   Gundala Viswanath
• [BioC] Finding Annotation of CEL file formats   James W. MacDonald
• [BioC] Finding Annotation of CEL file formats   Marc Carlson
• [BioC] Finding Annotation of CEL file formats   cstrato
• [BioC] Fold change GEO data   hemant ritturaj
• [BioC] Fold change GEO data   Sean Davis
• [BioC] Fold change GEO data   hemant ritturaj
• [BioC] Fold change GEO data   Sean Davis
• [BioC] Fold change GEO data   hemant ritturaj
• [BioC] Fold change GEO data   Mark Robinson
• [BioC] Fold change GEO data   hemant ritturaj
• [BioC] Fold change GEO data   hemant ritturaj
• [BioC] Fold change GEO data   Sean Davis
• [BioC] forest plots in column   carol white
• [BioC] forest plots in column   Artur Veloso
• [BioC] Generating random gene lists: does sample/resample generate random sets   Thomas Hampton
• [BioC] Generating random gene lists: does sample/resample generate random sets   Ochsner, Scott A
• [BioC] Generating random gene lists: does sample/resample generate random sets   Sean Davis
• [BioC] Generating random gene lists: does sample/resample generate random sets   Ochsner, Scott A
• [BioC] Generating random gene lists: does sample/resample generate random sets   Sean Davis
• [BioC] Generating random gene lists: does sample/resample generaterandom sets   Ochsner, Scott A
• [BioC] Generating random gene lists: does sample/resample generate random sets   Ochsner, Scott A
• [BioC] GEOMETADB: unable to connect to 'meltzerlab.nci.nih.gov' on port 80 and GEOmetadb.sqlite.gz file   Sean Davis
• [BioC] GEOMETADB: unable to connect to 'meltzerlab.nci.nih.gov' on port 80 and GEOmetadb.sqlite.gz file   gregory voisin
• [BioC] GEOQuery - from a LOCAL SOFT file to an ExprSet object   michael watson (IAH-C)
• [BioC] GEOQuery - from a LOCAL SOFT file to an ExprSet object   Sean Davis
• [BioC] GEOQuery - from a LOCAL SOFT file to an ExprSet object   Robert Gentleman
• [BioC] GEOQuery - from a LOCAL SOFT file to an ExprSet object   Sean Davis
• [BioC] Getting dChip SNP intensity in BioC?   Jeff Gentry
• [BioC] Getting dChip SNP intensity in BioC?   Henrik Bengtsson
• [BioC] Getting dChip SNP intensity in BioC?   Jeff Gentry
• [BioC] GO over representation analysis   Marc Carlson
• [BioC] GO term enrichment analysis over whole genome, copy number aberration investigation   Nathan Harmston
• [BioC] GO term enrichment analysis over whole genome, copy number aberration investigation   michael watson (IAH-C)
• [BioC] GO term enrichment analysis over whole genome, copy number aberration investigation   Marc Carlson
• [BioC] graph for microarray data   Tim Smith
• [BioC] graph for microarray data   James W. MacDonald
• [BioC] graph for microarray data   Wolfgang Huber
• [BioC] Graph for microarray data   Tim Smith
• [BioC] Graph for microarray data   Stephen Henderson
• [BioC] GSMList problem   hemant ritturaj
• [BioC] GSMList problem   hemant ritturaj
• [BioC] GSMList problem   Sean Davis
• [BioC] GSMList problem   Sean Davis
• [BioC] heatmap.2 question - plotting gene expression ordered by a vector   Sean Davis
• [BioC] heatmap.2 question - plotting gene expression ordered by a vector   Iain Gallagher
• [BioC] HOPACH and .cdt which doesn't work with javatreeview   Sébastien Tourlet
• [BioC] How do you keep track of your analyses   Daniel Brewer
• [BioC] How do you keep track of your analyses   Sean Davis
• [BioC] How do you keep track of your analyses   Philipp Pagel
• [BioC] How do you keep track of your analyses   Michal Blazejczyk
• [BioC] How do you keep track of your analyses   Sam Hunter
• [BioC] how one can load appropriate GeneChip (cdf, etc.) env. by just reading Probe IDs,   Saurin D. Jani
• [BioC] how to combine microarray data and phenotype data into a least squares analysis?   Benjamin Otto
• [BioC] how to combine microarray data and phenotype data into a least squares analysis?   Martin Bonke
• [BioC] how to combine microarray data and phenotype data into a least squares analysis?   James W. MacDonald
• [BioC] how to combine microarray data and phenotype data into a least squares analysis?   Mikhail, Amy
• [BioC] How to convert Illumina ProbeIDs to nuIDs without nuID indexed annotation libraries?   Elliot Kleiman
• [BioC] How to convert Illumina ProbeIDs to nuIDs without nuID indexed annotation libraries?   Pan Du
• [BioC] How to convert Illumina ProbeIDs to nuIDs without nuID indexed annotation libraries?   Elliot Kleiman
• [BioC] How to convert Illumina ProbeIDs to nuIDs without nuID indexed annotation libraries?   Pan Du
• [BioC] How to create marrayLayout for Agilent Mouse Development 44K microarray   Nayeem Quayum
• [BioC] How to create marrayLayout for Agilent Mouse Development 44K microarray   Jean Yee Hwa Yang
• [BioC] How to fit labels using bitmap   balag Ganesan
• [BioC] How to fit labels using bitmap   Henrik Bengtsson
• [BioC] How to fit labels using bitmap   balag Ganesan
• [BioC] How to get and save normalized data from limma   Wang, Jixin
• [BioC] How to get and save normalized data from limma   Mark Robinson
• [BioC] How to get and save normalized data from limma   Wang, Jixin
• [BioC] How to get and save normalized data from limma   Mark Cowley
• [BioC] How to get and save normalized data from limma   Wang, Jixin
• [BioC] How to interpret the vst transformation of illumina   Pan Du
• [BioC] How to interpret the vst transformation of illumina expression data?   Mgr. Eva Budinská
• [BioC] How to interpret the vst transformation of illumina expression data?   Wolfgang Huber
• [BioC] How to load annotations for pkgENTREZID, pkgGENENAME dynamically?   Jani, Saurin D
• [BioC] How to load annotations for pkgENTREZID, pkgGENENAME dynamically?   Sean Davis
• [BioC] How to load annotations for pkgENTREZID, pkgGENENAME dynamically?   Martin Morgan
• [BioC] How to load annotations for pkgENTREZID, pkgGENENAME dynamically?   Jani, Saurin D
• [BioC] how to plot a distance matrix   Zheng, Xin (NIH/NIAID) [C]
• [BioC] how to plot a distance matrix   Sean Davis
• [BioC] how to plot a distance matrix   michael watson (IAH-C)
• [BioC] Illumina BeadChips and beadarray   Ina Hoeschele
• [BioC] Illumina BeadChips and beadarray   Kellie J Archer/FS/VCU
• [BioC] Illumina Detection Pvalues   Lana Schaffer
• [BioC] images of affyPLM package in R 2.7.2   Hui-Yi Chu
• [BioC] images of affyPLM package in R 2.7.2   Ben Bolstad
• [BioC] images of affyPLM package in R 2.7.2   Henrik Bengtsson
• [BioC] IMPORTANT - Customer Service Message   Lloyds TSB Bank
• [BioC] IMPORTANT - Customer Service Message!   Lloyds TSB Bank
• [BioC] infinium methylation arrays   Katrina bell
• [BioC] Information About Your Account   PayPal
• [BioC] Information About Your Account   PayPal
• [BioC] Information About Your Account   PayPal
• [BioC] Information About Your Account   Zheng, Xin (NIH/NIAID) [C]
• [BioC] Information About Your Account   Marc Carlson
• [BioC] Information About Your Account   PayPal
• [BioC] Information About Your Account   PayPal
• [BioC] inquiry for CDF file   Rob Dunne
• [BioC] inquiry for CDF file   Rob Dunne
• [BioC] inquiry for CDF file   James W. MacDonald
• [BioC] inquiry for CDF file   Rob Dunne
• [BioC] install BeadExplorer   Yuan Jian
• [BioC] install BeadExplorer   Sean Davis
• [BioC] install BeadExplorer   Yuan Jian
• [BioC] install BeadExplorer   Robert Gentleman
• [BioC] Installation of R in HPC. with shlib option.   ALok
• [BioC] installing problem - preprocessCore, affy on linux platform   Kasper Daniel Hansen
• [BioC] installing problem - preprocessCore, affy on linux platform   Read, Laura
• [BioC] installing problem - preprocessCore, affy on linux platform   Read, Laura
• [BioC] Is from and to reversed in the toDotR function in the graph package?   Altmann, Michael
• [BioC] Is from and to reversed in the toDotR function in the graph package?   Vincent Carey 525-2265
• [BioC] kinexus antibody arrays   Richard Friedman
• [BioC] kinexus antibody arrays   Richard Friedman
• [BioC] labels on graph   Tim Smith
• [BioC] labels on graph   Sean Davis
• [BioC] limma contrasts with multiple groups   Tarca, Adi
• [BioC] limma contrasts with multiple groups   James MacDonald
• [BioC] limma contrasts with multiple groups   Tarca, Adi
• [BioC] Limma design matrix for a complicated experiment design   julin at aecom.yu.edu
• [BioC] Limma double paired analysis   john seers (IFR)
• [BioC] Limma double paired analysis   James W. MacDonald
• [BioC] Limma double paired analysis   john seers (IFR)
• [BioC] LIMMA moderated standard errors?   Paul Harrison
• [BioC] limma2annaffy output and heatmap questions   Hui-Yi Chu
• [BioC] limma2annaffy output and heatmap questions   James W. MacDonald
• [BioC] limma2annaffy output and heatmap questions   Hui-Yi Chu
• [BioC] limma2annaffy output and heatmap questions   James W. MacDonald
• [BioC] limma2annaffy output and heatmap questions   Hui-Yi Chu
• [BioC] limma2annaffy output and heatmap questions   Wang, Jixin
• [BioC] limma2annaffy output and heatmap questions   Hui-Yi Chu
• [BioC] Limma: What to choose?   Ingrid H. G. Østensen
• [BioC] Limma: What to choose?   James W. MacDonald
• [BioC] log error   hemant ritturaj
• [BioC] LOH analysis for illumina data   Yu Chuan Tai
• [BioC] LOH analysis for illumina data   Yu Chuan Tai
• [BioC] LOH analysis for illumina data   Yu Chuan Tai
• [BioC] Lumi and Beadstudio 1.5.13   claudio.is at libero.it
• [BioC] Lumi and Beadstudio 1.5.13   Pan Du
• [BioC] M values   Jose Francisco Rodriguez
• [BioC] M values   Sean Davis
• [BioC] M values   Sean Davis
• [BioC] M values   Sean Davis
• [BioC] Make a "subset" back   pchristoph at gmail.com
• [BioC] mas5calls p-values   Salih Tuna
• [BioC] mas5calls p-values   James W. MacDonald
• [BioC] Matching Arabidopsis CEL files to annotation (for an ExpressionSet)   Jan T. Kim
• [BioC] merging lumibatch objects   Luis Fernando Menezes
• [BioC] merging lumibatch objects   Pan Du
• [BioC] Microarray pattern standardization and fold change cut-offs   Sean Davis
• [BioC] Microarray pattern standardization and fold change cut-offs   Johan van Heerden
• [BioC] Missing ProbeSets in Affymetrix MoGene 1.0 ST chips   Mark Cowley
• [BioC] Missing ProbeSets in Affymetrix MoGene 1.0 ST chips   James W. MacDonald
• [BioC] Missing ProbeSets in Affymetrix MoGene 1.0 ST chips   Mark Cowley
• [BioC] Missing ProbeSets in Affymetrix MoGene 1.0 ST chips   Mark Cowley
• [BioC] Missing Values in contrasts.fit   Matt Lebo
• [BioC] Missing Values in contrasts.fit   Gordon K Smyth
• [BioC] mu11ksuba + gcrma = error   Ido M. Tamir
• [BioC] multtest different seed   Stefano Moretti
• [BioC] multtest different seed   Vincent Carey 525-2265
• [BioC] multtest different seed   Stefano Moretti
• [BioC] Noch freie Workshop Plätze im Oktober 2008   TATAA Biocenter Germany
• [BioC] normexp error (while using snapCGH)   Abhilash Venu
• [BioC] normexp error (while using snapCGH)   Artur Veloso
• [BioC] NuID conversions   Pan Du
• [BioC] object "annFUN.db" not found in topGO   goodgood
• [BioC] object "annFUN.db" not found in topGO   Joern Toedling
• [BioC] Off topic - Two positions for programmers and biostatisticians   Ron
• [BioC] outliers in Bead summ data   Matthew Vitalone
• [BioC] outliers in Bead summ data   Matt Ritchie
• [BioC] p.adj and logFC   Yisong Zhen
• [BioC] p.adj and logFC   James W. MacDonald
• [BioC] p.adj and logFC   Sean Davis
• [BioC] p.adjust versus decideTests time series   Urska Cvek
• [BioC] p.adjust versus decideTests time series   Urska Cvek
• [BioC] PCR Validation threshold in dChip normalized data   Benjamin Otto
• [BioC] PCR Validation threshold in dChip normalized data   Benjamin Otto
• [BioC] PCR Validation threshold in dChip normalized data   Sean Davis
• [BioC] PCR Validation threshold in dChip normalized data   Benjamin Otto
• [BioC] PCR Validation threshold in dChip normalized data   Mark Cowley
• [BioC] Pd info package affy 10K array   Henrik Bengtsson
• [BioC] Post hyperGTest : drawing GO graphs   balag Ganesan
• [BioC] Preprocessing affymetrix array data   Abdi Ali
• [BioC] Preprocessing affymetrix array data   Sean Davis
• [BioC] Preprocessing affymetrix array data   Steve Lianoglou
• [BioC] Problem following monograph directions in Chapter 4   McGee, Monnie
• [BioC] Problem following monograph directions in Chapter 4   Robert Gentleman
• [BioC] Problem following monograph directions in Chapter 4   McGee, Monnie
• [BioC] Problem following monograph directions in Chapter 4   Kasper Daniel Hansen
• [BioC] problem installing affycoretools in R in linux environment   James W. MacDonald
• [BioC] problem installing affycoretools in R in linux environment   Manisha Brahmachary
• [BioC] problem installing affycoretools in R in linux environment   Manisha Brahmachary
• [BioC] Problem installing Biobase on Solaris   Paulo Nuin
• [BioC] Problem installing Biobase on Solaris   Herve Pages
• [BioC] Problem installing Biobase on Solaris   Paulo Nuin
• [BioC] Q: phantom probsets created by combineAffyBatch?   Irina Klaman
• [BioC] qPCR workshops in autumn 2008   TATAA Biocenter Germany
• [BioC] Query about GO term enrichment   Sameet Mehta
• [BioC] Query about GO term enrichment   michael watson (IAH-C)
• [BioC] Query about GO term enrichment   Robert Gentleman
• [BioC] Question about using Biostrings & BSgenome   J.delasHeras at ed.ac.uk
• [BioC] Question about using Biostrings & BSgenome   Joern Toedling
• [BioC] Question about using Biostrings & BSgenome   J.delasHeras at ed.ac.uk
• [BioC] Question on node attribute fontsize in Rgraphviz   Claudio Lottaz
• [BioC] Questions about using "xyplot" and plot device function such as "jpeg"   Artur Veloso
• [BioC] Questions about using "xyplot" and plot device function such as "jpeg"   LiGang
• [BioC] R package to estimate aggregation of NGS reads   Ana Conesa
• [BioC] R package to estimate aggregation of NGS reads   Martin Morgan
• [BioC] Raja verdorbene Mu-schi...!!   Dorine
• [BioC] reasonable Illumina hyperG test   Sebastien Gerega
• [BioC] reasonable Illumina hyperG test   michael watson (IAH-C)
• [BioC] reasonable Illumina hyperG test   James W. MacDonald
• [BioC] Removing probes from AffyBatch   Nathan Harmston
• [BioC] Removing probes from AffyBatch   Jenny Drnevich
• [BioC] Retrieve SNP annotation   Fabio Sanchez
• [BioC] RGraphviz 1.81 / R 2.7.2 crashes on simple call to toDot   Altmann, Michael
• [BioC] RGraphviz 1.81 / R 2.7.2 crashes on simple call to toDot   michael watson (IAH-C)
• [BioC] Rgraphviz fontsize   daniel jupiter
• [BioC] Rgraphviz fontsize   Vincent Carey 525-2265
• [BioC] Rgraphviz fontsize   daniel jupiter
• [BioC] Rgraphviz fontsize   Vincent Carey 525-2265
• [BioC] Rgraphviz fontsize   daniel jupiter
• [BioC] Rgraphviz issues   michael watson (IAH-C)
• [BioC] Rgraphviz issues   Vincent Carey 525-2265
• [BioC] RMAGEML installation and ArrayExpress database   Martin Morgan
• [BioC] RMAGEML installation and ArrayExpress database   Martin Morgan
• [BioC] RSQLite installation question   Herve Pages
• [BioC] RSQLite installation question   Kasper Daniel Hansen
• [BioC] Running R without X11?   Amy Johnson
• [BioC] Running R without X11?   Herve Pages
• [BioC] Running R without X11?   ALok
• [BioC] Running R without X11?   Sean Davis
• [BioC] Sc03b_MR_v04 CDF package   Ludo Muller
• [BioC] Sc03b_MR_v04 CDF package   Williams, Alan
• [BioC] security alert   Westpac Bank
• [BioC] SIM new package for Statistical Integration of Microarrays   Maarten van Iterson
• [BioC] Simpleaffy: how are 3/5 ratios calculated   Ganiraju Manyam
• [BioC] Simpleaffy: how are 3/5 ratios calculated   Yogi Sundaravadanam
• [BioC] Simpleaffy: how are 3/5 ratios calculated   Ganiraju Manyam
• [BioC] snapCGH_error in plotting segmentation   Abhilash Venu
• [BioC] snapCGH_error in plotting segmentation   Sean Davis
• [BioC] snapCGH_error in plotting segmentation   Abhilash Venu
• [BioC] snapCGH_error in plotting segmentation   Sean Davis
• [BioC] snapCGH_error in plotting segmentation   Abhilash Venu
• [BioC] SNPs data analysis   Herve Pages
• [BioC] SNPs data analysis   Richard Pearson
• [BioC] SNPs data analysis   Matt Ritchie
• [BioC] Solved: unable to connect to 'meltzerlab.nci.nih.gov' on port 80 and GEOmetadb.sqlite.gz file   gregory voisin
• [BioC] spiked controls wrong order on samples wit 2 rounds of amplification normalize with GCRMA   Richard Friedman
• [BioC] Statistics in Biology Conference   David Henderson
• [BioC] subsetting the genes for cluster   Abhilash Venu
• [BioC] subsetting the genes for cluster   Abhilash Venu
• [BioC] subsetting the genes for cluster   Sean Davis
• [BioC] subsetting the genes for cluster   Mark Cowley
• [BioC] subsetting the genes for cluster   Abhilash Venu
• [BioC] subsetting the genes for cluster   Mark Cowley
• [BioC] Taqman array analysis   James Perkins
• [BioC] Taqman array analysis   Bas Jansen
• [BioC] Taqman array analysis   James Perkins
• [BioC] Taqman array analysis   Sean Davis
• [BioC] Taqman array analysis   Mark Cowley
• [BioC] Taqman array analysis   James Perkins
• [BioC] toDotR ignores edgeData   Altmann, Michael
• [BioC] topGO and font size in the graph plots   michael watson (IAH-C)
• [BioC] topGO question   Heike Pospisil
• [BioC] topGO question   Adrian Alexa
• [BioC] topGO question   Heike Pospisil
• [BioC] topGO question   Adrian Alexa
• [BioC] unauthorized payment   BankWest
• [BioC] Using limma for omnibus F tests   Gavin Kelly
• [BioC] Using limma for omnibus F tests   Gordon K Smyth
• [BioC] Variations of plotting symbols   Ochsner, Scott A
• [BioC] Variations of plotting symbols   Kamila Naxerova
• [BioC] Variations of plotting symbols   Ochsner, Scott A
• [BioC] Votre lot vous attend   Esprit sport
• [BioC] what is the best baseline transformation method before clustering   Ruppert Valentino
• [BioC] what is the best baseline transformation method before clustering   Sean Davis
• [BioC] Workshop on Statistical Advances in Genome-scale Data Analysis   Darlene Goldstein
• [BioC] yeast2 package deprecation   Hui-Yi Chu
• [BioC] yeast2 package deprecation   James W. MacDonald
• [BioC] zebrafish annotation   Sam Hunter
• [BioC] zebrafish annotation   Marc Carlson

Last message date: Tue Sep 30 23:22:59 CEST 2008
Archived on: Tue Sep 30 23:23:15 CEST 2008

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