March 2008 Archives by date

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Starting: Sat Mar 1 01:26:28 CET 2008
Ending: Mon Mar 31 21:45:11 CEST 2008
Messages: 371

• [BioC] multtest MTP raw P values = 0   Houston Gilbert
• [BioC] extremely low adjusted p-values in regression using limma   Gordon K Smyth
• [BioC] Is there an NCBI GEO GPL platform to bioclite package equivalence table available?   Lynn Miller
• [BioC] Help for readIllumina beadlevel error   Johnstone, Alice
• [BioC] How to remove some probes from one probeset in the begining?   pkuonline
• [BioC] biomaRt, mysql ensembl db not available   Johannes Rainer
• [BioC] biomaRt, mysql ensembl db not available, again   Johannes Rainer
• [BioC] A query about FDR cut-off values   Mayte Garcia Conesa
• [BioC] A query about FDR cut-off values   Sean Davis
• [BioC] biomaRt, mysql ensembl db not available, again   Sean Davis
• [BioC] Agilent 4x44k annotation file   Daniel Brewer
• [BioC] Agilent 4x44k annotation file   Sean Davis
• [BioC] gene.strip exonmap   Paul Hammer
• [BioC] gene.strip exonmap   Crispin Miller
• [BioC] biomaRt, mysql ensembl db not available, again   Johannes Rainer
• [BioC] BioMart error   swang
• [BioC] BioMart error   James W. MacDonald
• [BioC] VanillaICE on SNP 6.0 affymetrix platform problem   Sergii Ivakhno
• [BioC] BioStrings - BStringViews Object   Mayra Eduardoff
• [BioC] probe file for custom array   James W. MacDonald
• [BioC] biomaRt, mysql ensembl db not available, again   Steffen Durinck
• [BioC] [Fwd: [ensembl-dev] Ensembl downtime March 7-9]   Cei Abreu-Goodger
• [BioC] Yeast annotations   Devarajan, Karthik
• [BioC] How to remove some probes from one probeset in the begining?   Wolfgang Huber
• [BioC] gene.strip exonmap   Paul Hammer
• [BioC] passing in parameters to annotation packages (e.g hgu95av2)   Tim Smith
• [BioC] Yeast annotations   Marc Carlson
• [BioC] passing in parameters to annotation packages (e.g hgu95av2)   Sean Davis
• [BioC] How to remove some probes from one probeset in the begining?   pkuonline
• [BioC] passing in parameters to annotation packages (e.g hgu95av2)   Marc Carlson
• [BioC] Agilent 4x44k annotation file   Francois Pepin
• [BioC] Announcement: Deadline for new package submissions is 3/24/08   Marc Carlson
• [BioC] How to make the probe package for gcrma?   Jun Yin
• [BioC] passing in parameters to annotation packages (e.g hgu95av2)   Tim Smith
• [BioC] probe file for custom array   Lana Schaffer
• [BioC] probe file for custom array   Lana Schaffer
• [BioC] passing in parameters to annotation packages (e.g hgu95av2)   Martin Morgan
• [BioC] Beginner's question on Limma   Chintanu
• [BioC] biomaRt, mysql ensembl db not available, again   Steffen Durinck
• [BioC] Yeast annotations   Marc Carlson
• [BioC] multtest MTP raw P values = 0   Shtatland, Timur
• [BioC] biomaRt, mysql ensembl db not available, again   Johannes Rainer
• [BioC] Inconsistency in GOstats results after GO enrichment   Tony Chiang
• [BioC] Inconsistency in GOstats results after GO enrichment   Chanchal Kumar
• [BioC] limma makeContrasts names   Yannick Wurm
• [BioC] Is there an NCBI GEO GPL platform to bioclite package equivalence table available?   Sean Davis
• [BioC] Inconsistency in GOstats results after GO enrichment   Robert Gentleman
• [BioC] problems with pdInfoBuilder   maerker at atlas-biolabs.de
• [BioC] vsn2 and print-tips   Hans-Ulrich Klein
• [BioC] vsn2 and print-tips   Wolfgang Huber
• [BioC] How to remove some probes from one probeset in the begining?   Jenny Drnevich
• [BioC] array CGH - raw data analysis   João Fadista
• [BioC] Inconsistency in GOstats results after GO enrichment   Chanchal Kumar
• [BioC] within class standard deviation query   Manisha Brahmachary
• [BioC] normalized probes   Lana Schaffer
• [BioC] XLSolutions 9 Courses: Upcoming March-April 2008 R/S+ Course Schedule by XLSolutions Corp   Sue Turner
• [BioC] array CGH - raw data analysis   Sean Davis
• [BioC] normalized probes   James W. MacDonald
• [BioC] within class standard deviation query   James W. MacDonald
• [BioC] within class standard deviation query   James W. MacDonald
• [BioC] question about irregular replicates within array with limma   Wei Xu
• [BioC] Missing columns in write.fit() and poorer precision than topTable()   Ng Stanley
• [BioC] BioStrings - BStringViews Object   Herve Pages
• [BioC] compute the raw t-values using limma, not those from lmFit etc   Ng Stanley
• [BioC] justGCRMA() error message   Niels Høgslund
• [BioC] Missing columns in write.fit() and poorer precision than topTable()   James W. MacDonald
• [BioC] justGCRMA() error message   James W. MacDonald
• [BioC] compute the raw t-values using limma, not those from lmFit etc   James W. MacDonald
• [BioC] problems with pdInfoBuilder   James W. MacDonald
• [BioC] Yeast annotations   Marc Carlson
• [BioC] meaning of logFC in regression and how to run a multiple regression in limma   Artur Veloso
• [BioC] Installing bioconductor packages on leopard inside custom R   Shripad Sinari
• [BioC] Installing bioconductor packages on leopard inside custom R   Sean Davis
• [BioC] Installing bioconductor packages on leopard inside custom R   Max Kuhn
• [BioC] 2x3 factorial matrix design   Jason Pear
• [BioC] Installing bioconductor packages on leopard inside custom R   Shripad Sinari
• [BioC] probe and probeset removal script   Jenny Drnevich
• [BioC] Help: regarding reading in agilent custom array using ExpressSet   Rangesh Kunnavakkam
• [BioC] To biomaRt users: Major downtime March 7th 4pm - March 8th 6pm   Steffen
• [BioC] meaning of logFC in regression and how to run a multiple regression in limma   Gordon K Smyth
• [BioC] mouse gene arrays   Komal Jain
• [BioC] problem with GOHyperGParams in package Category   Mark W Kimpel
• [BioC] problem with GOHyperGParams in package Category   Tony Chiang
• [BioC] limma with missing values   Hans-Ulrich Klein
• [BioC] Analysis Question   Lucia García
• [BioC] illumina: how to retrieve annotation information out of tif-files?   Christian Kohler
• [BioC] problem with GOHyperGParams in package Category   Mark W Kimpel
• [BioC] problem with GOHyperGParams in package Category   Tony Chiang
• [BioC] heatmap.2 coloring question   Srinivas Iyyer
• [BioC] heatmap.2 coloring question   Artur Veloso
• [BioC] Running Pumacomb on both cores of dual-core machine   Paul Geeleher
• [BioC] heatmap.2 coloring question   James W. MacDonald
• [BioC] heatmap.2 coloring question   Srinivas Iyyer
• [BioC] Affymetrix Human Exon Array MPS and PS files contain different probeset groups   Susan Wilson
• [BioC] problem with GOHyperGParams in package Category   Seth Falcon
• [BioC] problem with GOHyperGParams in package Category   Mark W Kimpel
• [BioC] problem with GOHyperGParams in package Category   Tony Chiang
• [BioC] What should happen to control probe information in bead level Illumina analyses?   Johnstone, Alice
• [BioC] illumina: how to retrieve annotation information out of tif-files?   Matt Ritchie
• [BioC] BSgenome package - add the bos taurus genome   João Fadista
• [BioC] heatmap.2 coloring question   James W. MacDonald
• [BioC] How to make the probe package for gcrma?   James W. MacDonald
• [BioC] How to make the probe package for gcrma?   Jun Yin
• [BioC] What should happen to control probe information in bead level Illumina analyses?   Simon Lin
• [BioC] Why is my matrix transposed?   Balasubramanian Ganesan
• [BioC] BSgenome package - add the bos taurus genome   hpages at fhcrc.org
• [BioC] problem upgrading limma on Windows Vista   Susan J. Miller
• [BioC] problem upgrading limma on Windows Vista   James W. MacDonald
• [BioC] Why is my matrix transposed?   James W. MacDonald
• [BioC] affy ids from gene symbols   IAIN GALLAGHER
• [BioC] affy ids from gene symbols   James W. MacDonald
• [BioC] affy ids from gene symbols   Marc Carlson
• [BioC] affy ids from gene symbols   Martin Morgan
• [BioC] Why is my matrix transposed?   Kasper Daniel Hansen
• [BioC] limma with missing values   Gordon K Smyth
• [BioC] do no numerical   Louise
• [BioC] BSgenome package - add the bos taurus genome   Matt Settles
• [BioC] limma with missing values   Hans-Ulrich Klein
• [BioC] limma with missing values   Gordon K Smyth
• [BioC] limma Factorial 2x2x2x4 : Did I a correct parametrization ?   Marcelo Laia
• [BioC] What should happen to control probe information in beadlevel Illumina analyses?   Johnstone, Alice
• [BioC] a bug in hypergraph?   Tony Chiang
• [BioC] a bug in hypergraph?   Li Long
• [BioC] a bug in hypergraph?   Tony Chiang
• [BioC] Using BioC or R functions in C-programs   Gunther Höning
• [BioC] Using BioC or R functions in C-programs   mtmorgan at fhcrc.org
• [BioC] What should happen to control probe information in beadlevel Illumina analyses?   Simon Lin
• [BioC] custom CDF with GC-RMA   iromashk at student.umass.edu
• [BioC] custom CDF with GC-RMA   James W. MacDonald
• [BioC] vsn2 and print-tips   Wolfgang Huber
• [BioC] Using BioC or R functions in C-programs   lgautier at altern.org
• [BioC] bioconductor.org down tomorrow March 11 between noon and 4pm (Seattle time)   Herve Pages
• [BioC] limma with missing values   Gordon K Smyth
• [BioC] multtest MTP: Error: cannot allocate vector   Shtatland, Timur
• [BioC] Limma and EMPTY gene id for specific blocks of rows   Ng Stanley
• [BioC] Reply Me ASAP!!!   Patrick Chan
• [BioC] Limma and EMPTY gene id for specific blocks of rows   Yannick Wurm
• [BioC] Is it possible to use RMA on Agilent Data   Ulrike Goebel
• [BioC] Is it possible to use RMA on Agilent Data   Francois Pepin
• [BioC] A question about within-array replicates with limma   Wei Xu
• [BioC] limma, variance within groups   Khan, Sohail
• [BioC] bioconductor.org is back   Herve Pages
• [BioC] BSgenome package - add the bos taurus genome   Herve Pages
• [BioC] Possible Data Bug in GO   Ben Woodcroft
• [BioC] How to remove probes from Illumina data?   Johnstone, Alice
• [BioC] Affymetrix Human Exon Array MPS and PS files contain different probeset groups   Michal Okoniewski
• [BioC] p-value   seems shedole
• [BioC] permutation test   Patricia
• [BioC] permutation test   john seers (IFR)
• [BioC] permutation test   Patricia
• [BioC] basic limma questions   Endre Sebestyen
• [BioC] permutation test   M Perez
• [BioC] p-value   James W. MacDonald
• [BioC] permutation test   James W. MacDonald
• [BioC] Paired arrays and limma   john seers (IFR)
• [BioC] How to properly cite marray package.   Giulio Di Giovanni
• [BioC] Paired arrays and limma   James W. MacDonald
• [BioC] Paired arrays and limma   john seers (IFR)
• [BioC] Affymetrix Human Exon Array MPS and PS files contain different probeset groups   Williams, Alan
• [BioC] two-line labels in GO graphs   Robert Castelo
• [BioC] Paired arrays and limma   James W. MacDonald
• [BioC] How to get ENTREZID from Gene symbol in bioconductor   Srinivas Iyyer
• [BioC] How to get ENTREZID from Gene symbol in bioconductor   Marc Carlson
• [BioC] How to get ENTREZID from Gene symbol in bioconductor   Srinivas Iyyer
• [BioC] How to remove probes from Illumina data?   Matt Ritchie
• [BioC] How to get ENTREZID from Gene symbol in bioconductor   Marc Carlson
• [BioC] averaging duplicate spots after vsn transformation   Maurice Melancon
• [BioC] averaging duplicate spots after vsn transformation   Maurice Melancon
• [BioC] Paired arrays and limma   john seers (IFR)
• [BioC] homology package question   Weiwei Shi
• [BioC] problem with arrayQuality in OSX 10.5   "M. Gonzalo Claros Díaz"
• [BioC] problem with arrayQuality in OSX 10.5   Tony Chiang
• [BioC] problem with arrayQuality in OSX 10.5   Christian Kohler
• [BioC] Classification Society Annual Meeting   William Shannon
• [BioC] homology package question   James W. MacDonald
• [BioC] Application of multiple testing correction in the context of using Stouffer's method for combing p-values   Ochsner, Scott A
• [BioC] two-line labels in GO graphs   Marc Carlson
• [BioC] homology package question   Marc Carlson
• [BioC] two-line labels in GO graphs   Marc Carlson
• [BioC] Possible Data Bug in GO   Marc Carlson
• [BioC] two-line labels in GO graphs   Florian Hahne
• [BioC] averaging duplicate spots after vsn transformation   Ben Teags
• [BioC] getGEO - getting the .CEL files from GEO   Tim Smith
• [BioC] getGEO - getting the .CEL files from GEO   Hooiveld, Guido
• [BioC] LIMMA: array spot summary options beyond duplicateCorrelation()?   Quin Wills
• [BioC] two-line labels in GO graphs   Robert Castelo
• [BioC] getGEO - getting the .CEL files from GEO   Sean Davis
• [BioC] two-line labels in GO graphs   Joern Toedling
• [BioC] detection calls without MM probes   Julien Roux
• [BioC] detection calls without MM probes   Samuel Wuest
• [BioC] calculating median expression between to identical gene names in data frame   Srinivas Iyyer
• [BioC] Posterior probability for svm   Weiyin Zhou
• [BioC] CodeLink Probe ID in new Annoation Package different from the NCBI GEO?   Lingsheng Dong
• [BioC] Interpreting topTable results for limma factorial design   Sally
• [BioC] Interpreting topTable results for limma factorial design   James W. MacDonald
• [BioC] CodeLink Probe ID in new Annoation Package different from the NCBI GEO?   Sean Davis
• [BioC] BSgenome package - add the bos taurus genome   Herve Pages
• [BioC] CodeLink Probe ID in new Annoation Package different from the NCBI GEO?   Lingsheng Dong
• [BioC] CodeLink Probe ID in new Annoation Package different from the NCBI GEO?   Diego Diez
• [BioC] calculating median expression between to identical gene names in data frame   Adaikalavan Ramasamy
• [BioC] Extracting expressions after a multtest procedure   JUAN MIGUEL MARIN DIAZARAQUE
• [BioC] We produce a new type of green building material----bamboo floor.   =?hz-gb-2312?q?=B5=C2=C0=FB=D3=D0=CF=DE=B9=AB=CB=BE=D7=F9=C2=E4=D4=DA_
• [BioC] averaging duplicate spots after vsn transformation   Wolfgang Huber
• [BioC] Extracting expressions after a multtest procedure (part 2)   JUAN MIGUEL MARIN DIAZARAQUE
• [BioC] Extracting expressions after a multtest procedure (part 2)   Sean Davis
• [BioC] Extracting expressions after a multtest procedure (part 2)   Wolfgang Huber
• [BioC] get probe level intensity from Affymetrix Exon Array platform   shirley zhang
• [BioC] InterPro Package   Anguraj Sadanandam
• [BioC] InterPro Package   Yong Yin
• [BioC] Application of multiple testing correction in the context of using Stouffer's method for combing p-values   Claus-Dieter Mayer
• [BioC] get probe level intensity from Affymetrix Exon Array platform   James W. MacDonald
• [BioC] Extracting expressions after a multtest procedure (part 2)   JUAN MIGUEL MARIN DIAZARAQUE
• [BioC] Marray package help   H Parikh
• [BioC] We produce a new type of green building material----bamboo floor.   =?hz-gb-2312?q?=B5=C2=C0=FB=D3=D0=CF=DE=B9=AB=CB=BE_
• [BioC] Marray package help   Jean Yee Hwa Yang
• [BioC] beadarray_1.7.6. problem/error with readBeadSummaryData()   Christian Kohler
• [BioC] get probe level intensity from Affymetrix Exon Array platform   shirley zhang
• [BioC] beadarray_1.7.6. problem/error with readBeadSummaryData()   Jenny Drnevich
• [BioC] beadarray_1.7.6. problem/error with readBeadSummaryData()   Mark Dunning
• [BioC] beadarray_1.7.6. problem/error with readBeadSummaryData()   Christian Kohler
• [BioC] get probe level intensity from Affymetrix Exon Array platform   James W. MacDonald
• [BioC] beadarray_1.7.6. problem/error with readBeadSummaryData()   Lynn Amon
• [BioC] How to get affyId from GOstats output   alex lam (RI)
• [BioC] Course: R/Splus Fundamentals and Programming Techniques.***April 2008*** in San Francisco and New York City   Sue Turner
• [BioC] How to get affyId from GOstats output   James W. MacDonald
• [BioC] two-line labels in GO graphs   Robert Castelo
• [BioC] two-line labels in GO graphs   Joern Toedling
• [BioC] Basic questions   Chintanu
• [BioC] Basic questions   Kasper Daniel Hansen
• [BioC] microarrays image analysis   Abhilash Venu
• [BioC] get probe level intensity from Affymetrix Exon   raffaele.calogero at unito.it
• [BioC] fulton   halsey napoleon
• [BioC] Understanding GOstats   alex lam (RI)
• [BioC] Understanding GOstats   James W. MacDonald
• [BioC] Ensembl 49 in biomaRt?   Cei Abreu-Goodger
• [BioC] nimblegen ChIP to chip array   Simon Knott
• [BioC] nimblegen ChIP to chip array   Sean Davis
• [BioC] Ensembl 49 in biomaRt?   Steffen
• [BioC] Working with the vsn object   Khan, Sohail
• [BioC] get probe level intensity from Affymetrix Exon   shirley zhang
• [BioC] Extracting expressions after a multtest procedure (part2)   J. Miguel Marin
• [BioC] Listing of oncologists etc..   Kaitlin Logan
• [BioC] Genefilter parameters for mouse 430 2   Richard Friedman
• [BioC] Genefilter parameters for mouse 430 2   James W. MacDonald
• [BioC] Genefilter parameters for mouse 430 2 #2   Richard Friedman
• [BioC] Genefilter parameters for mouse 430 2 #2   James W. MacDonald
• [BioC] research   seems shedole
• [BioC] how and where to obtain all the starting and ending loci of all the p and q on the 23 pairs of chromosomes ?   Ng Stanley
• [BioC] two-line labels in GO graphs   Robert Castelo
• [BioC] how and where to obtain all the starting and ending loci of all the p and q on the 23 pairs of chromosomes ?   Sean Davis
• [BioC] Genefilter parameters for mouse 430 2 #3   Richard Friedman
• [BioC] Genefilter parameters for mouse 430 2 #3   James W. MacDonald
• [BioC] InterPro Package   Wolfgang Huber
• [BioC] microarrays image analysis   Wolfgang Huber
• [BioC] Working with the vsn object   Wolfgang Huber
• [BioC] GOstat question   nicolas servant
• [BioC] GOstat question   Robert Gentleman
• [BioC] GC-content of biostring   Lana Schaffer
• [BioC] GC-content of biostring   Sean Davis
• [BioC] Basic code   Chintanu
• [BioC] exprs2excel problem   Dr Balazs Gyorffy
• [BioC] GOstat question   nicolas servant
• [BioC] exprs2excel problem   James W. MacDonald
• [BioC] GOstat question   James W. MacDonald
• [BioC] GOstat question   nicolas servant
• [BioC] GOstat question   Sean Davis
• [BioC] GOstat question   Sean Davis
• [BioC] GOstats - hyperGTest   Paul Evans
• [BioC] GOstats - hyperGTest   Sean Davis
• [BioC] Error in function (classes, fdef, mtable): unable to find an inherited method for function "indexProbes", for signature "exprSet", "character"   Suprabhath Reddy Gajjala
• [BioC] Error in function (classes, fdef, mtable): unable to find an inherited method for function "indexProbes", for signature "exprSet", "character"   Sean Davis
• [BioC] Error in function (classes, fdef, mtable): unable to find an inherited method for function "indexProbes", for signature "exprSet", "character"   Wolfgang Huber
• [BioC] Error in function (classes, fdef, mtable): unable to find an inherited method for function "indexProbes", for signature "exprSet", "character"   Sean Davis
• [BioC] GOstats - hyperGTest   Paul Evans
• [BioC] Multiple gal files   Christina Tigress
• [BioC] Error in function (classes, fdef, mtable): unable to find an inherited method for function "indexProbes", for signature "exprSet", "character"   Suprabhath Reddy
• [BioC] Biostatistics Post-Doc   William Shannon
• [BioC] Postdoctoral Research @ Cold Spring Harbor Laboratory   Matthew Vaughn
• [BioC] Multiple gal files   Christina Tigress
• [BioC] Affymetrix control genes   Patrícia Luiza Nunes da Costa
• [BioC] GO-Analysis using TopGO for Yeast2 data   Tobias Koschubs
• [BioC] Possible bug with impute.knn   Peter White
• [BioC] GO-Analysis using TopGO for Yeast2 data   Adrian Alexa
• [BioC] GO-Analysis using TopGO for Yeast2 data   Marc Carlson
• [BioC] GSEABase - mapIdentifiers   Hans-Ulrich Klein
• [BioC] Questions of package "deal"   Tu Kang
• [BioC] Newbie question on GOstats (hyperGTest) for dual channel (from SMD) arrays   Paul Evans
• [BioC] Affymetrix control genes plus links   Patrícia Luiza Nunes da Costa
• [BioC] problem with analyzing human 244k agilent array with snapCGH   Sergii Ivakhno
• [BioC] UCD Bioinformatics & Computational Biomedicine PhD programme: applications   aedin culhane
• [BioC] Newbie question on GOstats (hyperGTest) for dual channel (from SMD) arrays   Marc Carlson
• [BioC] problem with analyzing human 244k agilent array with snapCGH   Sean Davis
• [BioC] Newbie question on GOstats (hyperGTest) for dual channel (from SMD) arrays   Paul Evans
• [BioC] vsn with a reference set   Roumyana Yordanova
• [BioC] GOstats - hyperGTest using "KEGGHyperGParams"   Paul Evans
• [BioC] Newbie question on GOstats (hyperGTest) for dual channel (from SMD) arrays   Marc Carlson
• [BioC] vsn with a reference set   Wolfgang Huber
• [BioC] BSgenome package - add the bos taurus genome   Herve Pages
• [BioC] BSgenome package - add the bos taurus genome   James W. MacDonald
• [BioC] GSEABase - mapIdentifiers   Martin Morgan
• [BioC] MD Listing   cockatoo
• [BioC] vsn with a reference set   Roumyana Yordanova
• [BioC] Docs on Upgrading R in Panther   Balasubramanian Ganesan
• [BioC] Docs on Upgrading R in Panther   Herve Pages
• [BioC] BiomaRt error: ncol(result) == length(attributes) is not TRUE   Quin Wills
• [BioC] BiomaRt error: ncol(result) == length(attributes) is not TRUE   Quin Wills
• [BioC] BiomaRt error: ncol(result) == length(attributes) is not TRUE   Quin Wills
• [BioC] BiomaRt error: ncol(result) == length(attributes) is not TRUE   Quin Wills
• [BioC] BiomaRt error: ncol(result) == length(attributes) is not TRUE   Steffen
• [BioC] BiomaRt error: ncol(result) == length(attributes) is not TRUE   Quin Wills
• [BioC] vsn with a reference set   Wolfgang Huber
• [BioC] BiomaRt error: ncol(result) == length(attributes) is not TRUE   Steffen
• [BioC] BiomaRt error: ncol(result) == length(attributes) is not TRUE   Wolfgang Huber
• [BioC] Symposium on Computational and Systems Biology, 24.4.2008, Vienna, Austria   Gerhard Thallinger
• [BioC] Symposium on Computational and Systems Biology, 24.4.2008, Vienna, Austria   Gerhard Thallinger
• [BioC] BiomaRt error: ncol(result) == length(attributes) is not TRUE   Quin Wills
• [BioC] basic limma questions   Endre Sebestyen
• [BioC] Update vsn: http://www.bioconductor.org/packages/devel/bioc/html/vsn.html   Roumyana Yordanova
• [BioC] labeling a hclust tree with custom labels   IAIN GALLAGHER
• [BioC] problem with analyzing human 244k agilent array with snapCGH   Sean Davis
• [BioC] labeling a hclust tree with custom labels   Sean Davis
• [BioC] BiomaRt error: ncol(result) == length(attributes) is not TRUE   Steffen Durinck
• [BioC] normalization strategy   Catherine Juste
• [BioC] BiomaRt error: ncol(result) == length(attributes) is not TRUE   Quin Wills
• [BioC] Affymetrix control genes plus links   Patrícia Luiza Nunes da Costa
• [BioC] major alterations to GGdata/GGtools planned   Vincent Carey 525-2265
• [BioC] not a valid package -- installed < 2.0.0?   Kathy Duncan
• [BioC] not a valid package -- installed < 2.0.0?   Sean Davis
• [BioC] labeling a hclust tree with custom labels   Mikhail, Amy
• [BioC] labeling a hclust tree with custom labels   Mikhail, Amy
• [BioC] Error message: "...not a valid package -- installed < 2.0.0?"   Kathy Duncan
• [BioC] Error message: "...not a valid package -- installed < 2.0.0?"   Sean Davis
• [BioC] Agilent dual channel treated as single channel   Srinivas Iyyer
• [BioC] Agilent dual channel treated as single channel   Sean Davis
• [BioC] Error message: "...not a valid package -- installed < 2.0.0?"   Kathy Duncan
• [BioC] Error message: "...not a valid package -- installed < 2.0.0?"   Sean Davis
• [BioC] Error in .nextMethod(e1, e2) with updated R and bioC package on MAC OS   Anat Caspi
• [BioC] Agilent spike-in probes   Sean Davis
• [BioC] Error in .nextMethod(e1, e2) with updated R and bioC package on MAC OS   Martin Morgan
• [BioC] Error in .nextMethod(e1, e2) with updated R and bioC package on MAC OS   Anat Caspi
• [BioC] Error message: "...not a valid package -- installed < 2.0.0?"   Kathy Duncan
• [BioC] Agilent spike-in probes   Naomi Altman
• [BioC] Remove from package-list   Kathy Duncan
• [BioC] basic limma questions   Gordon K Smyth
• [BioC] topGO and GOstats conflict   Dick Beyer
• [BioC] topGO and GOstats conflict   Robert Gentleman
• [BioC] topGO and GOstats conflict   Dick Beyer
• [BioC] topGO enrichment using ensembl gene list   Julien Roux
• [BioC] boxplot(dataRaw) and MAplot(dataRaw) after read.exon() using the exonmap library   De Bondt, An-7114 [PRDBE]
• [BioC] plot.gene() with smaller key color steps?   Paul Hammer
• [BioC] Open position for genomic data analysis at the CNIC-Madrid, Spain   Ana Dopazo
• [BioC] basic limma questions   Endre Sebestyen
• [BioC] Problem installing affyio on Solaris 9 with R-2.6.2   Jun Zhang
• [BioC] ReadAffy fails 64bit linux Error in .nextMethod(e1, e2) :   Langdon W B
• [BioC] Problem installing affyio on Solaris 9 with R-2.6.2   Ben Bolstad
• [BioC] ReadAffy fails 64bit linux Error in .nextMethod(e1, e2) :   Sean Davis
• [BioC] GOstats - KEGGHyperGParams errors   Paul Evans
• [BioC] Annotation package for Agilent Human G4110A chip   Tim Smith
• [BioC] topGO and GOstats conflict   Dick Beyer
• [BioC] Heatmap color Key   s.khalid at qmul.ac.uk
• [BioC] Heatmap color Key   James W. MacDonald
• [BioC] Annotation package for Agilent Human G4110A chip   Marc Carlson
• [BioC] row.names in the latest vsn   Roumyana Yordanova
• [BioC] plot multiple genes over time   Mark Kimpel
• [BioC] topGO enrichment using ensembl gene list   James W. MacDonald
• [BioC] ReadAffy fails 64bit linux Error in .nextMethod(e1, e2) :   James W. MacDonald
• [BioC] plot multiple genes over time   Sean Davis
• [BioC] Annotation package for Agilent Human G4110A chip   Tim Smith
• [BioC] plot multiple genes over time   Thomas Girke
• [BioC] Remove from package-list   Kasper Daniel Hansen
• [BioC] GOstats - hyperGTest using "KEGGHyperGParams"   Robert Gentleman

Last message date: Mon Mar 31 21:45:11 CEST 2008
Archived on: Mon Mar 31 21:45:39 CEST 2008

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