[BioC] Installing bioconductor packages on leopard inside custom R

[Max Kuhn]

This has been discussed at length on [R-SIG-Mac] circa Feb.

See:

  https://stat.ethz.ch/pipermail/r-sig-mac/2008-February/004604.html

  https://stat.ethz.ch/pipermail/r-sig-mac/2008-February/004607.html

and the resulting discussion.

Max



On Wed, Mar 5, 2008 at 2:32 PM, Sean Davis <sdavis2 at mail.nih.gov> wrote:
> On Wed, Mar 5, 2008 at 2:13 PM, Shripad Sinari <ssinari at tgen.org> wrote:
>  > Hello,
>  >
>  >  I have a 64-bit Mac and Leopard. I have compiled and installed R from source
>  >  with gcc 4.2 for architecture x86_64.
>  >
>  >  * I would appreciate suggestions on installing bioconductor packages easily,
>  >  i.e., preferably not from source.
>  >
>  >  Otherwise,
>  >
>  >  * Can any one suggest, as how to download the sources for all available
>  >  packages from a repository?
>  >
>  >  * Does any have a script to compile these in a batch and install?
>
>  Take a look at the help for "available.packages".  You will also want
>  to read the Bioconductor installation instructions on the bioconductor
>  website.  You can use biocLite() to install packages and specify
>  type='source'.
>
>  Sean
>
>
>
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-- 

Max