[R] Failed to install RQuantLib in Ubuntu machine
Christofer Bogaso
bog@@o@chri@tofer @ending from gm@il@com
Wed Jan 2 22:46:58 CET 2019
Hi,
I was trying to install RQuantLib in my Ubuntu machine which failed with
below information :
*> install.packages('RQuantLib', INSTALL_opts = c('--no-lock'))*
*Installing package into ‘/usr/local/lib/R/site-library’*
*(as ‘lib’ is unspecified)*
*trying URL 'https://cloud.r-project.org/src/contrib/RQuantLib_0.4.7.tar.gz
<https://cloud.r-project.org/src/contrib/RQuantLib_0.4.7.tar.gz>'*
*Content type 'application/x-gzip' length 189726 bytes (185 KB)*
*==================================================*
*downloaded 185 KB*
** installing *source* package ‘RQuantLib’ ...*
*** package ‘RQuantLib’ successfully unpacked and MD5 sums checked*
*checking whether the C++ compiler works... yes*
*checking for C++ compiler default output file name... a.out*
*checking for suffix of executables... *
*checking whether we are cross compiling... no*
*checking for suffix of object files... o*
*checking whether we are using the GNU C++ compiler... yes*
*checking whether g++ accepts -g... yes*
*checking how to run the C++ preprocessor... g++ -E*
*checking whether we are using the GNU C++ compiler... (cached) yes*
*checking whether g++ accepts -g... (cached) yes*
*checking for R... yes*
*checking for quantlib-config... yes*
*checking for Boost development files... yes*
*checking for minimal Boost version... yes*
*configure: creating ./config.status*
*config.status: creating src/Makevars*
*Completed configuration and ready to build.*
*** libs*
*g++ -std=gnu++11 -I/usr/share/R/include -DNDEBUG
-I"/usr/local/lib/R/site-library/Rcpp/include" -g -O2
-fstack-protector-strong -Wformat -Werror=format-security -Wdate-time
-D_FORTIFY_SOURCE=2 -g -I/usr/local/include -fpermissive -I../inst/include
-I. -DBOOST_NO_AUTO_PTR -fopenmp -fpic -g -O2 -fstack-protector-strong
-Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c
RcppExports.cpp -o RcppExports.o*
*g++ -std=gnu++11 -I/usr/share/R/include -DNDEBUG
-I"/usr/local/lib/R/site-library/Rcpp/include" -g -O2
-fstack-protector-strong -Wformat -Werror=format-security -Wdate-time
-D_FORTIFY_SOURCE=2 -g -I/usr/local/include -fpermissive -I../inst/include
-I. -DBOOST_NO_AUTO_PTR -fopenmp -fpic -g -O2 -fstack-protector-strong
-Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c
affine.cpp -o affine.o*
*g++ -std=gnu++11 -I/usr/share/R/include -DNDEBUG
-I"/usr/local/lib/R/site-library/Rcpp/include" -g -O2
-fstack-protector-strong -Wformat -Werror=format-security -Wdate-time
-D_FORTIFY_SOURCE=2 -g -I/usr/local/include -fpermissive -I../inst/include
-I. -DBOOST_NO_AUTO_PTR -fopenmp -fpic -g -O2 -fstack-protector-strong
-Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c
asian.cpp -o asian.o*
*g++ -std=gnu++11 -I/usr/share/R/include -DNDEBUG
-I"/usr/local/lib/R/site-library/Rcpp/include" -g -O2
-fstack-protector-strong -Wformat -Werror=format-security -Wdate-time
-D_FORTIFY_SOURCE=2 -g -I/usr/local/include -fpermissive -I../inst/include
-I. -DBOOST_NO_AUTO_PTR -fopenmp -fpic -g -O2 -fstack-protector-strong
-Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c
barrier_binary.cpp -o barrier_binary.o*
*g++ -std=gnu++11 -I/usr/share/R/include -DNDEBUG
-I"/usr/local/lib/R/site-library/Rcpp/include" -g -O2
-fstack-protector-strong -Wformat -Werror=format-security -Wdate-time
-D_FORTIFY_SOURCE=2 -g -I/usr/local/include -fpermissive -I../inst/include
-I. -DBOOST_NO_AUTO_PTR -fopenmp -fpic -g -O2 -fstack-protector-strong
-Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c
bermudan.cpp -o bermudan.o*
*g++ -std=gnu++11 -I/usr/share/R/include -DNDEBUG
-I"/usr/local/lib/R/site-library/Rcpp/include" -g -O2
-fstack-protector-strong -Wformat -Werror=format-security -Wdate-time
-D_FORTIFY_SOURCE=2 -g -I/usr/local/include -fpermissive -I../inst/include
-I. -DBOOST_NO_AUTO_PTR -fopenmp -fpic -g -O2 -fstack-protector-strong
-Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c
bonds.cpp -o bonds.o*
*g++ -std=gnu++11 -I/usr/share/R/include -DNDEBUG
-I"/usr/local/lib/R/site-library/Rcpp/include" -g -O2
-fstack-protector-strong -Wformat -Werror=format-security -Wdate-time
-D_FORTIFY_SOURCE=2 -g -I/usr/local/include -fpermissive -I../inst/include
-I. -DBOOST_NO_AUTO_PTR -fopenmp -fpic -g -O2 -fstack-protector-strong
-Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c
calendars.cpp -o calendars.o*
*g++ -std=gnu++11 -I/usr/share/R/include -DNDEBUG
-I"/usr/local/lib/R/site-library/Rcpp/include" -g -O2
-fstack-protector-strong -Wformat -Werror=format-security -Wdate-time
-D_FORTIFY_SOURCE=2 -g -I/usr/local/include -fpermissive -I../inst/include
-I. -DBOOST_NO_AUTO_PTR -fopenmp -fpic -g -O2 -fstack-protector-strong
-Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c
curves.cpp -o curves.o*
*g++ -std=gnu++11 -I/usr/share/R/include -DNDEBUG
-I"/usr/local/lib/R/site-library/Rcpp/include" -g -O2
-fstack-protector-strong -Wformat -Werror=format-security -Wdate-time
-D_FORTIFY_SOURCE=2 -g -I/usr/local/include -fpermissive -I../inst/include
-I. -DBOOST_NO_AUTO_PTR -fopenmp -fpic -g -O2 -fstack-protector-strong
-Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c
dates.cpp -o dates.o*
*g++ -std=gnu++11 -I/usr/share/R/include -DNDEBUG
-I"/usr/local/lib/R/site-library/Rcpp/include" -g -O2
-fstack-protector-strong -Wformat -Werror=format-security -Wdate-time
-D_FORTIFY_SOURCE=2 -g -I/usr/local/include -fpermissive -I../inst/include
-I. -DBOOST_NO_AUTO_PTR -fopenmp -fpic -g -O2 -fstack-protector-strong
-Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c
daycounter.cpp -o daycounter.o*
*g++ -std=gnu++11 -I/usr/share/R/include -DNDEBUG
-I"/usr/local/lib/R/site-library/Rcpp/include" -g -O2
-fstack-protector-strong -Wformat -Werror=format-security -Wdate-time
-D_FORTIFY_SOURCE=2 -g -I/usr/local/include -fpermissive -I../inst/include
-I. -DBOOST_NO_AUTO_PTR -fopenmp -fpic -g -O2 -fstack-protector-strong
-Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c
discount.cpp -o discount.o*
*g++ -std=gnu++11 -I/usr/share/R/include -DNDEBUG
-I"/usr/local/lib/R/site-library/Rcpp/include" -g -O2
-fstack-protector-strong -Wformat -Werror=format-security -Wdate-time
-D_FORTIFY_SOURCE=2 -g -I/usr/local/include -fpermissive -I../inst/include
-I. -DBOOST_NO_AUTO_PTR -fopenmp -fpic -g -O2 -fstack-protector-strong
-Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c
hullwhite.cpp -o hullwhite.o*
*g++ -std=gnu++11 -I/usr/share/R/include -DNDEBUG
-I"/usr/local/lib/R/site-library/Rcpp/include" -g -O2
-fstack-protector-strong -Wformat -Werror=format-security -Wdate-time
-D_FORTIFY_SOURCE=2 -g -I/usr/local/include -fpermissive -I../inst/include
-I. -DBOOST_NO_AUTO_PTR -fopenmp -fpic -g -O2 -fstack-protector-strong
-Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c
implieds.cpp -o implieds.o*
*g++ -std=gnu++11 -I/usr/share/R/include -DNDEBUG
-I"/usr/local/lib/R/site-library/Rcpp/include" -g -O2
-fstack-protector-strong -Wformat -Werror=format-security -Wdate-time
-D_FORTIFY_SOURCE=2 -g -I/usr/local/include -fpermissive -I../inst/include
-I. -DBOOST_NO_AUTO_PTR -fopenmp -fpic -g -O2 -fstack-protector-strong
-Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c
modules.cpp -o modules.o*
*g++ -std=gnu++11 -I/usr/share/R/include -DNDEBUG
-I"/usr/local/lib/R/site-library/Rcpp/include" -g -O2
-fstack-protector-strong -Wformat -Werror=format-security -Wdate-time
-D_FORTIFY_SOURCE=2 -g -I/usr/local/include -fpermissive -I../inst/include
-I. -DBOOST_NO_AUTO_PTR -fopenmp -fpic -g -O2 -fstack-protector-strong
-Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c
sabr.cpp -o sabr.o*
*g++ -std=gnu++11 -I/usr/share/R/include -DNDEBUG
-I"/usr/local/lib/R/site-library/Rcpp/include" -g -O2
-fstack-protector-strong -Wformat -Werror=format-security -Wdate-time
-D_FORTIFY_SOURCE=2 -g -I/usr/local/include -fpermissive -I../inst/include
-I. -DBOOST_NO_AUTO_PTR -fopenmp -fpic -g -O2 -fstack-protector-strong
-Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c
schedule.cpp -o schedule.o*
*g++ -std=gnu++11 -I/usr/share/R/include -DNDEBUG
-I"/usr/local/lib/R/site-library/Rcpp/include" -g -O2
-fstack-protector-strong -Wformat -Werror=format-security -Wdate-time
-D_FORTIFY_SOURCE=2 -g -I/usr/local/include -fpermissive -I../inst/include
-I. -DBOOST_NO_AUTO_PTR -fopenmp -fpic -g -O2 -fstack-protector-strong
-Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c
utils.cpp -o utils.o*
*g++ -std=gnu++11 -I/usr/share/R/include -DNDEBUG
-I"/usr/local/lib/R/site-library/Rcpp/include" -g -O2
-fstack-protector-strong -Wformat -Werror=format-security -Wdate-time
-D_FORTIFY_SOURCE=2 -g -I/usr/local/include -fpermissive -I../inst/include
-I. -DBOOST_NO_AUTO_PTR -fopenmp -fpic -g -O2 -fstack-protector-strong
-Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c
vanilla.cpp -o vanilla.o*
*g++ -std=gnu++11 -I/usr/share/R/include -DNDEBUG
-I"/usr/local/lib/R/site-library/Rcpp/include" -g -O2
-fstack-protector-strong -Wformat -Werror=format-security -Wdate-time
-D_FORTIFY_SOURCE=2 -g -I/usr/local/include -fpermissive -I../inst/include
-I. -DBOOST_NO_AUTO_PTR -fopenmp -fpic -g -O2 -fstack-protector-strong
-Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c
zero.cpp -o zero.o*
*g++ -std=gnu++11 -shared -L/usr/lib/R/lib -Wl,-Bsymbolic-functions
-Wl,-z,relro -o RQuantLib.so RcppExports.o affine.o asian.o
barrier_binary.o bermudan.o bonds.o calendars.o curves.o dates.o
daycounter.o discount.o hullwhite.o implieds.o modules.o sabr.o schedule.o
utils.o vanilla.o zero.o -L/usr/local/lib -lQuantLib -fopenmp
-L/usr/lib/R/lib -lR*
*installing to /usr/local/lib/R/site-library/RQuantLib/libs*
*** R*
*** data*
*** demo*
*** inst*
*** preparing package for lazy loading*
*** help*
**** installing help indices*
*** building package indices*
*** testing if installed package can be loaded*
* *** caught segfault ****
*address 0x7f57dba1d9a0, cause 'invalid permissions'*
*Traceback:*
* 1: dyn.load(file, DLLpath = DLLpath, ...)*
* 2: library.dynam(lib, package, package.lib)*
* 3: loadNamespace(package, lib.loc)*
* 4: doTryCatch(return(expr), name, parentenv, handler)*
* 5: tryCatchOne(expr, names, parentenv, handlers[[1L]])*
* 6: tryCatchList(expr, classes, parentenv, handlers)*
* 7: tryCatch({ attr(package, "LibPath") <- which.lib.loc ns <-
loadNamespace(package, lib.loc) env <- attachNamespace(ns, pos = pos,
deps)}, error = function(e) { P <- if (!is.null(cc <- conditionCall(e)))
paste(" in", deparse(cc)[1L]) else "" msg <-
gettextf("package or namespace load failed for %s%s:\n %s",
sQuote(package), P, conditionMessage(e)) if (logical.return)
message(paste("Error:", msg), domain = NA) else stop(msg, call. = FALSE,
domain = NA)})*
* 8: library(pkg_name, lib.loc = lib, character.only = TRUE, logical.return
= TRUE)*
* 9: withCallingHandlers(expr, packageStartupMessage = function(c)
invokeRestart("muffleMessage"))*
*10: suppressPackageStartupMessages(library(pkg_name, lib.loc = lib,
character.only = TRUE, logical.return = TRUE))*
*11: doTryCatch(return(expr), name, parentenv, handler)*
*12: tryCatchOne(expr, names, parentenv, handlers[[1L]])*
*13: tryCatchList(expr, classes, parentenv, handlers)*
*14: tryCatch(expr, error = function(e) { call <- conditionCall(e) if
(!is.null(call)) { if (identical(call[[1L]], quote(doTryCatch)))
call <- sys.call(-4L) dcall <- deparse(call)[1L]
prefix <- paste("Error in", dcall, ": ") LONG <- 75L msg <-
conditionMessage(e) sm <- strsplit(msg, "\n")[[1L]] w <- 14L
+ nchar(dcall, type = "w") + nchar(sm[1L], type = "w") if (is.na
<http://is.na>(w)) w <- 14L + nchar(dcall, type = "b") +
nchar(sm[1L], type = "b") if (w > LONG)
prefix <- paste0(prefix, "\n ") } else prefix <- "Error : " msg
<- paste0(prefix, conditionMessage(e), "\n")
.Internal(seterrmessage(msg[1L])) if (!silent &&
identical(getOption("show.error.messages"), TRUE)) {
cat(msg, file = outFile) .Internal(printDeferredWarnings()) }
invisible(structure(msg, class = "try-error", condition = e))})*
*15: try(suppressPackageStartupMessages(library(pkg_name, lib.loc = lib,
character.only = TRUE, logical.return = TRUE)))*
*16: tools:::.test_load_package("RQuantLib",
"/usr/local/lib/R/site-library")*
*An irrecoverable exception occurred. R is aborting now ...*
*Segmentation fault (core dumped)*
*ERROR: loading failed*
** removing ‘/usr/local/lib/R/site-library/RQuantLib’*
*The downloaded source packages are in*
* ‘/tmp/RtmpPvzBa6/downloaded_packages’*
*Warning message:*
*In install.packages("RQuantLib", INSTALL_opts = c("--no-lock")) :*
* installation of package ‘RQuantLib’ had non-zero exit status*
* Below is my SessionInfo :*
> sessionInfo()
R version 3.4.4 (2018-03-15)
Platform: x86_64-pc-linux-gnu (64-bit)
Running under: Ubuntu 16.04.4 LTS
Matrix products: default
BLAS: /usr/lib/libblas/libblas.so.3.6.0
LAPACK: /usr/lib/lapack/liblapack.so.3.6.0
locale:
[1] LC_CTYPE=en_US.UTF-8 LC_NUMERIC=C
[3] LC_TIME=en_US.UTF-8 LC_COLLATE=en_US.UTF-8
[5] LC_MONETARY=en_US.UTF-8 LC_MESSAGES=en_US.UTF-8
[7] LC_PAPER=en_US.UTF-8 LC_NAME=C
[9] LC_ADDRESS=C LC_TELEPHONE=C
[11] LC_MEASUREMENT=en_US.UTF-8 LC_IDENTIFICATION=C
attached base packages:
[1] stats graphics grDevices utils datasets methods base
loaded via a namespace (and not attached):
[1] compiler_3.4.4 tools_3.4.4
Any help will be highly appreciated. Thank,
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