[R] LDheatmap

[Val]

Thank you Bert,

Yes I looked a this one and I was looking for if any one has used it or not
before?  My data set is different what they are showing in the paper





On Wed, Feb 3, 2016 at 4:00 PM, Bert Gunter <bgunter.4567 at gmail.com> wrote:

> Have you looked here (found immediately by an internet search!)?
>
> https://cran.r-project.org/web/packages/LDheatmap/vignettes/LDheatmap.pdf
>
> Cheers,
> Bert
>
>
>
> Bert Gunter
>
> "The trouble with having an open mind is that people keep coming along
> and sticking things into it."
> -- Opus (aka Berkeley Breathed in his "Bloom County" comic strip )
>
>
> On Wed, Feb 3, 2016 at 1:49 PM, Ashta <sewashm at gmail.com> wrote:
> > Hi all,
> >
> > I am  looking for an R package that calculates  a pair wise LD
> > (linkage disequilibrium) I came up with  library(LDheatmap).  has any
> > one used this library? I would appreciate if I get a help how to use
> > this library for my set of data..
> >
> >
> > My data set look like
> >
> > Geno file
> > Name1 1 1 2 2 2 2
> > Name2 2 2 2 2 2 2
> > Name3 2 2 2 2 2 2
> > Name4  2 2 2 2 2 2
> > Name5 1 1 2 2 2 2
> >
> >
> > NameN  1   1 1 2 2 2 2
> >
> >
> > The other file is map file
> > Chromosome, SNP, Location (physical)
> >
> >
> > Thank you in advance
> >
> > ______________________________________________
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> > PLEASE do read the posting guide
> http://www.R-project.org/posting-guide.html
> > and provide commented, minimal, self-contained, reproducible code.
>
> ______________________________________________
> R-help at r-project.org mailing list -- To UNSUBSCRIBE and more, see
> https://stat.ethz.ch/mailman/listinfo/r-help
> PLEASE do read the posting guide
> http://www.R-project.org/posting-guide.html
> and provide commented, minimal, self-contained, reproducible code.
>

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