[R] LDheatmap

[Bert Gunter]

Have you looked here (found immediately by an internet search!)?

https://cran.r-project.org/web/packages/LDheatmap/vignettes/LDheatmap.pdf

Cheers,
Bert



Bert Gunter

"The trouble with having an open mind is that people keep coming along
and sticking things into it."
-- Opus (aka Berkeley Breathed in his "Bloom County" comic strip )


On Wed, Feb 3, 2016 at 1:49 PM, Ashta <sewashm at gmail.com> wrote:
> Hi all,
>
> I am  looking for an R package that calculates  a pair wise LD
> (linkage disequilibrium) I came up with  library(LDheatmap).  has any
> one used this library? I would appreciate if I get a help how to use
> this library for my set of data..
>
>
> My data set look like
>
> Geno file
> Name1 1 1 2 2 2 2
> Name2 2 2 2 2 2 2
> Name3 2 2 2 2 2 2
> Name4  2 2 2 2 2 2
> Name5 1 1 2 2 2 2
>
>
> NameN  1   1 1 2 2 2 2
>
>
> The other file is map file
> Chromosome, SNP, Location (physical)
>
>
> Thank you in advance
>
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