[BioC] DESeq package error

[Fares Z. Najar, Ph.D.]

Hi Dan,

Here is what I entered after I started "R":

 > source("http://bioconductor.org/biocLite.R")
 > biocLite("DESeq")
     Using R version 2.10.1, biocinstall version 2.5.11.
     Installing Bioconductor version 2.5 packages:
     [1] "DESeq"
     Please wait...

     Warning message:
     In getDependencies(pkgs, dependencies, available, lib) :
       package 'DESeq' is not available
 >


Thanks.

Fares




Dan Tenenbaum wrote:
> On Wed, Jan 9, 2013 at 7:42 AM, Fares Z. Najar, Ph.D. <fznajar at ou.edu> wrote:
>> Hi all,
>>
>> I am trying to install DESeq package.  According to the website instructions
>> ("http://bioconductor.org/packages/2.11/bioc/html/DESeq.html")S. tarting
>> from "R", I get the message:
>>
>> Warning message:
>> In getDependencies(pkgs, dependencies, available, lib) :
>>     package 'DESeq' is not available
>>
>> Was there something I should have done before?
>>
>
> Can you post
> 1) The commands you are tying that cause the error.
> 2) The output of sessionInfo()
> 3) The output of biocinstallRepos()
>
> Thanks,
> Dan
>
>
>> Best,
>> Fares
>>
>> --
>> -----------------------------------------------
>> Fares Z. Najar, Ph.D.
>> Research Scientist
>> Chemistry and Biochemistry
>> Advanced Center for Genome Technology (ACGT)
>> Stephenson Research and Technology Center
>> 101 David L. Boren Blvd. Room 2170
>> Norman, OK 73019
>>
>> Phone: 405-325-4912
>> Fax:   405-325-7762
>> E-mail: fznajar at ou.edu
>>
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-- 
-----------------------------------------------
Fares Z. Najar, Ph.D.
Research Scientist
Chemistry and Biochemistry
Advanced Center for Genome Technology (ACGT)
Stephenson Research and Technology Center
101 David L. Boren Blvd. Room 2170
Norman, OK 73019

Phone: 405-325-4912
Fax:   405-325-7762
E-mail: fznajar at ou.edu