[BioC] R/Maanova Tutorial

[Wolfgang Huber]

Dear Ricardo

that is great. I was wondering whether you'd find it useful -- for 
simplifying the maintenance of your tutorial, and improving its 'look 
and feel' -- to use the R package and vignette technology.

Probably you don't want to stick the big "Illum_data_sample.txt" example 
data into the maanova package, so you could create a separate package 
"maanovatutorial" that contains the example data as well as the .Rnw 
file for the vignette, similar, say, to how it is done in the estrogen 
package:
http://www.bioconductor.org/packages/devel/data/experiment/html/estrogen.html
(see in particular the inst/extdata and inst/doc subdirectories of that 
package).

	Best wishes
	Wolfgang


  Verdugo scripsit 13/03/10 18:46:
> Hello:
> 
> I am at Gary Churchill's group where R/MAanova is developed and  
> maintained. After assisting numerous users with similar issues, I  
> though it would be better to write a self contained tutorial that  
> would walk newbies through a differential expression analysis using  
> contrasts.
> 
> You can get the tutorial (data included) and see the expected results at
> http://churchill.jax.org/software/rmaanova/tutorials.shtml
> 
> It is well documented, explained step by step.
> 
> This is work in progress so comments are welcome. If other tutorials  
> would be useful, send an email to maanova at jax.org
> 
> Regards,
> 
> Ricardo Verdugo
> 
> ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
> Ricardo A. Verdugo S., D.V.M. Ph.D.
> Postdoctoral Fellow
> Gary Churchill Group
> The Jackson Laboratory
> 600 Main Street,
> Bar Harbor, ME 04609
> ricardo.verdugo at jax.org
> +1-207-288-6715
> +1-207-288-6847 Fax
> ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
> 
> 
> 	[[alternative HTML version deleted]]
> 
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-- 

Best wishes
      Wolfgang


--
Wolfgang Huber
EMBL
http://www.embl.de/research/units/genome_biology/huber/contact