[R-SIG-Mac] fcaR plot not working

[Prof Brian Ripley]

On 23/08/2024 16:06, Sparapani, Rodney via R-SIG-Mac wrote:
> Hi Peter:
> 
> I don’t know what the graph package is.  But Rgraphviz is an archived package on CRAN…
> https://cran.r-project.org/src/contrib/Archive/Rgraphviz/

Both are current Bioconductor packages, so their software repository 
needs to be selected.

This is not really a macOS question.  On any platform

setRepositories(ind = c(1:4))
install.packages(c('fcaR', 'hasseDiagram'))

should work: I tested a vanilla R 4.4.1 on arm64 macOS.

> 
> --
> Rodney Sparapani, Associate Professor of Biostatistics, He/Him/His
> President, Wisconsin Chapter of the American Statistical Association
> Data Science Institute, Division of Biostatistics
> Medical College of Wisconsin, Milwaukee Campus
> 
> If this is outside of working hours, then please respond when convenient.
> 
> From: R-SIG-Mac <r-sig-mac-bounces using r-project.org> on behalf of Peter van Summeren <petervansummeren using gmail.com>
> Date: Friday, August 23, 2024 at 4:44 AM
> To: R-SIG-Mac using r-project.org <R-SIG-Mac using r-project.org>
> Subject: [R-SIG-Mac] fcaR plot not working
> ATTENTION: This email originated from a sender outside of MCW. Use caution when clicking on links or opening attachments.
> ________________________________
> 
> Hello,
> I have a MacBook Air M1
> 
> I newly installed R and R studio. Also fcaR(formal concept analysis for R).
> I followed fcaR via the help files.
> Finally I did fc_planets$standardize() : worked.
> Then: fc_planets$concepts$plot()
> Warning message:
> You have not installed the 'hasseDiagram' package, which is needed to plot the lattice.
> So, I installed:
> install.packages("hasseDiagram”)
> Then: library("hasseDiagram”)
> Finally:
>    fc_planets$concepts$plot()
> It gave:
> Warning in install.packages :
>    dependencies ‘Rgraphviz’, ‘graph’ are not available
> trying URL 'https://urldefense.com/v3/__https://cran.rstudio.com/bin/macosx/big-sur-arm64/contrib/4.4/hasseDiagram_0.2.0.tgz__;!!H8mHWRdzp34!5oi0FHg-_i3CfEk8FOCqWEVuAOVF_cgiitwPE6t-nvlbIckN5N9UXPvstxUJYtbLyVGCJay83ujsmvcIDmXE3Oh3CA$ '
> Content type 'application/x-gzip' length 37789 bytes (36 KB)
> ==================================================
> downloaded 36 KB
> 
> No idea what to do to get a plot of the lattice.
> Any help would be appreciated.
> Peter
> 
> _______________________________________________
> R-SIG-Mac mailing list
> R-SIG-Mac using r-project.org
> https://urldefense.com/v3/__https://stat.ethz.ch/mailman/listinfo/r-sig-mac__;!!H8mHWRdzp34!5oi0FHg-_i3CfEk8FOCqWEVuAOVF_cgiitwPE6t-nvlbIckN5N9UXPvstxUJYtbLyVGCJay83ujsmvcIDmXIcMD7ng$<https://urldefense.com/v3/__https:/stat.ethz.ch/mailman/listinfo/r-sig-mac__;!!H8mHWRdzp34!5oi0FHg-_i3CfEk8FOCqWEVuAOVF_cgiitwPE6t-nvlbIckN5N9UXPvstxUJYtbLyVGCJay83ujsmvcIDmXIcMD7ng$>
> 
> 	[[alternative HTML version deleted]]
> 
> _______________________________________________
> R-SIG-Mac mailing list
> R-SIG-Mac using r-project.org
> https://stat.ethz.ch/mailman/listinfo/r-sig-mac


-- 
Brian D. Ripley,                  ripley using stats.ox.ac.uk
Emeritus Professor of Applied Statistics, University of Oxford