[R-SIG-Mac] Problems with RMA normalization in 2.6 versions

[Balasubramanian Ganesan]

Hi all
I have been seeing some issues with R 2.6 (both 1 & 2) that when I  
normalize data using rma() or justRMA(), the data is transposed i.e.  
probes are columns and samples are rows. Currently I am transposing  
my data, but this does cause inconvenieces in analyzing data further  
with our normal routines.
Can this be fixed?

Balasubramanian Ganesan
Research Assistant Professor
Center for Integrated BioSystems
Utah State University
4700 Old Main Hill
Logan UT 84322
balag at cc.usu.edu