[R] my R code worked well when running the first 1000 lines of R code

[Ebert,Timothy Aaron]

Hi Yuan,
   When you load some packages do you get messages saying that some function is being masked? What can happen is that one package has a function with the same name as another package. The conflict is resolved by having one package mask the other. However, this can cause conflicts if your code uses the function in a way that is only supported in the masked package.

Tim

-----Original Message-----
From: R-help <r-help-bounces using r-project.org> On Behalf Of Yuan Chun Ding via R-help
Sent: Wednesday, June 12, 2024 12:28 PM
To: r-help using R-project.org (r-help using r-project.org) <r-help using r-project.org>
Subject: [R] my R code worked well when running the first 1000 lines of R code

[External Email]

Hi R users,

The following code worked well to summarize four data groups in a dataframe for three variables (t_depth, t_alt_count, t_alt_ratio), 12 columns of summary, see attached.
However, after running another 2000 lines of R codes using functions from more than 10 other R  libraries, then it only generated one column of summary.
Do you know why?

Thank you,

Yuan Chun Ding

summary_anno1148ft <- anno1148ft %>%
  pivot_longer(c(t_depth, t_alt_count, t_alt_ratio), names_to = "measure") %>%
  group_by(dat, measure) %>%
  summarize(minimum = min(value,na.rm=T),
            q25 = quantile(value, probs = 0.25,na.rm=T),
            med = median(value,na.rm=T),
            q75 = quantile(value, probs = 0.75,na.rm=T),
            maximum = max(value,na.rm=T),
            average = mean(value,na.rm=T),
            #standard_deviation = sd(value),
            .groups = "drop"
  )
summary_anno1148ft <-t(summary_anno1148ft)



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