[R] Surprising behavior and bugs in R 4.0.4

[Eric Berger]

I have no familiarity with these packages but I did a search in CRAN on
api_create and found it is defined in the plotly package. I then confirmed
that the seurat package does reference plotly.

You might try installing the plotly package before trying to install seurat.

HTH,
Eric


On Sat, Mar 20, 2021 at 6:05 PM Jiefei Wang <szwjf08 using gmail.com> wrote:

> Hi Miso,
>
> Have you tried to install Seurat from CRAN? What you were using is the
> GitHub version of the package and has been actively updating, so the
> problem might be from the package.
>
> Best,
> Jiefei
>
> On Sat, Mar 20, 2021 at 10:32 PM Miso Na <mna3 using jhu.edu> wrote:
>
> > Dear helpers,
> >
> > Although I uninstalled and reinstalled R more than 3 times to delete the
> > error in api_create, it did not work. The error is representing on the
> very
> > first page on R consol.
> > Error: could not find function "api_create"
> >
> > I guess this error makes impossible to install library 'SCMAP',
> > 'SingleCellExperiment' or 'Seurat'.
> > For example, I got this error when I tried to install those libraries.
> > Installing package into 'C:/Users/user/Documents/R/win-library/4.0'
> > (as 'lib' is unspecified)
> > Error: could not find function "api_create"
> > Execution halted
> > Error: Failed to install 'Seurat' from GitHub:
> >   (converted from warning) installation of package
> >
> 'C:/Users/user/AppData/Local/Temp/RtmpKYL3Pe/file2c2c6cb0766e/Seurat_4.0.1.tar.gz'
> > had non-zero exit status
> >
> >
> > My sessionInfo is here!
> >
> > > sessionInfo()
> > R version 4.0.4 (2021-02-15)
> > Platform: x86_64-w64-mingw32/x64 (64-bit)
> > Running under: Windows 10 x64 (build 19041)
> >
> > Matrix products: default
> >
> > locale:
> > [1] LC_COLLATE=English_United States.1252
> > [2] LC_CTYPE=English_United States.1252
> > [3] LC_MONETARY=English_United States.1252
> > [4] LC_NUMERIC=C
> > [5] LC_TIME=English_United States.1252
> > system code page: 949
> >
> > attached base packages:
> > [1] stats     graphics  grDevices utils     datasets  methods   base
> >
> > loaded via a namespace (and not attached):
> > [1] compiler_4.0.4
> >
> > Thanks for your help!
> >
> >         [[alternative HTML version deleted]]
> >
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> >
>
>         [[alternative HTML version deleted]]
>
> ______________________________________________
> R-help using r-project.org mailing list -- To UNSUBSCRIBE and more, see
> https://stat.ethz.ch/mailman/listinfo/r-help
> PLEASE do read the posting guide
> http://www.R-project.org/posting-guide.html
> and provide commented, minimal, self-contained, reproducible code.
>

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