[R] Problems in writing code for circos plot

[Jim Lemon]

Hi Puja,
Three things:
1) Your data files are very large. If you do manage to get circular
plots out of them with the circlize library they will probably be very
dense.
2) The structure of your data includes too many levels in "Chrom" to
get the circlize functions to work. I had to pare them back to the
non-random levels.
3) You should probably change the subject line of your message to
"Would anyone care to do my work for me?"

Jim

On Mon, Jan 27, 2020 at 6:47 AM pooja sinha <pjsinha07 using gmail.com> wrote:
>
> Hi All,
>
> I have attached the three different datasets for Rn6 genome (rat) and I
> needed to use circos plot by *circlize package in R*. Please anyone help me
> in writing the code and making the plot. Any help will be highly
> appreciated.
> The three file links are below:
>
> File 1: YOUNGCONTROL.csv (
> https://drive.google.com/open?id=1arQqlzkRJybclikAByB9w9TCnvmD_Y46 )
> File 2:  YOUNGTREATED.csv (
> https://drive.google.com/open?id=1vMidiGmoK4zsYjvf2sT9RbjwF72W0IhO )
> File 3:  YOUNGTREATED.vs.YOUNGCONTROL.sig.csv (
> https://drive.google.com/open?id=0B33BGsdd5x_dOGF0X3BuaWRoMmdSYklOZnJoX09uaWdnNEdN
>  )
>
> The circos plot having the outermost ring contain Rn6 ideogram followed by
> YOUNGCONTROL, YOUNGTREATED & last innermost circle will be of
> YOUNGTREATED.vs.YOUNGCONTROL.sig
>
> Thanks,
> Puja
>
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>
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