[R] question about system.file()

[Anand Menon]

Hello, Could you please help unsubscribe me from these emails. Thank you.

Kind Regards,
Anand K Menon
Cell: 1-416-939-3671


On Fri, Apr 10, 2020 at 3:46 PM Ana Marija <sokovic.anamarija using gmail.com>
wrote:

> Hello,
>
> I would like to try this example in this link:
>
> https://www.rdocumentation.org/packages/SNPRelate/versions/1.6.4/topics/snpgdsBED2GDS
>
> for example this line:
>
> bed.fn <- system.file("extdata", "plinkhapmap.bed.gz", package="SNPRelate")
>
> I have in current directory from where I would run this function a
> file named output4.bed
>
> in order to run the above, can I just run this:
> bed.fn <- system.file("output4.bed", package="SNPRelate")
>
> what is "extdata" ? Do I need it if my output4.bed is in the directory
> from where I am running this?
>
> Also do I need to have .gz format of output4.bed?
>
> Thanks
> Ana
>
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