[R] System("source activate condaenv")

[Bert Gunter]

R is *not* RStudio. Please go to the RStudio site, not here,  for help with
that software.

Bert Gunter

"The trouble with having an open mind is that people keep coming along and
sticking things into it."
-- Opus (aka Berkeley Breathed in his "Bloom County" comic strip )


On Wed, Mar 20, 2019 at 6:30 AM Sandra Elisabeth Chaudron <
sandra.chaudron using gmail.com> wrote:

> Hi,
> I am using the server version of RStudio and I have a script where I want
> to activate the conda environment that I set up for a bioinformatic tool
> called MinVar.
> For that I use in my script the command: system("source
> /home/ubuntu/miniconda3/bin/activate minvar"). I provide the path to
> activate because the tool is installed under my second user name in the
> server I use.
> And the error message is : sh: 1: source: not found error in running
> command
> I tried to look for solution in any possible forum but did not find
> anything.
> I was wondering if a solution for such issue was already discussed? and an
> answer found?
> Thanks a lot.
>
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>
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