[R] Genuine relative paths with R
Olivier GIVAUDAN
o||v|er_g|v@ud@n @end|ng |rom hotm@||@com
Thu Oct 11 01:11:14 CEST 2018
It is not wrong to claim that R currently doesn't have a function returning the path of the R file where this same function was invoked.
'getwd()' is indeed not equivalent to VBA 'Application.ThisWorkbook.Path' or C macro '__FILE__' or SAS %sysget(SAS_EXECFILENAME), etc.
________________________________
De : Duncan Murdoch <murdoch.duncan using gmail.com>
Envoy� : mercredi 10 octobre 2018 22:59
� : Olivier GIVAUDAN; Jeff Newmiller
Cc : r-help using r-project.org
Objet : Re: [R] Genuine relative paths with R
On 10/10/2018 6:52 PM, Olivier GIVAUDAN wrote:
>> Again, you seem to think making a package is a big deal.
>
> Perhaps not a big deal (I believe you, I didn't write an R package yet),
> but not as straightforward as having a function within an R file
> returning its own path.
>
>> But you're free to decide not to do it: just please don't repeat
> falseclaims about R (like the ones about paths that started this long
> thread).
>
> Which false claims?
"But I am really wondering why R doesn't have (please tell me if I'm
wrong) this basic feature as many other languages have it (batch, shell,
C, LaTeX, SAS with macro-variables, etc.)?"
Duncan Murdoch
> ------------------------------------------------------------------------
> *De :* Duncan Murdoch <murdoch.duncan using gmail.com>
> *Envoy� :* mercredi 10 octobre 2018 22:31
> *� :* Olivier GIVAUDAN; Jeff Newmiller
> *Cc :* r-help using r-project.org
> *Objet :* Re: [R] Genuine relative paths with R
> On 10/10/2018 6:17 PM, Olivier GIVAUDAN wrote:
>>> Nothing says a package has to go on CRAN. You can distribute
>> themprivately to a small audience.
>>
>> Yes, I agree in theory. But this solution still violates my own
>> proportionality principle.
>
> Again, you seem to think making a package is a big deal. Maybe that was
> true 10 years ago (though I wrote and tested a package in a 45 minute
> presentation at UseR 2008), but now it's very easy.
>
> But you're free to decide not to do it: just please don't repeat false
> claims about R (like the ones about paths that started this long thread).
>
>>
>>> If you know as much about R as the people who wrote it
>>
>> I didn't claim that (that's was a quite general / theoretical statement,
>> not necessarily and only applicable to R).
>
> I didn't say you made that claim. I was answering your question about
> why inventing your own way is not a good idea. It might be a good idea,
> if you know the system very, very well. Otherwise, it's probably better
> to work the standard way.
>
> Duncan Murdoch
>
>>
>>> For example, you might thinkthat all front ends set the working
>> directory to the directory of theprogram they are running, because the
>> ones you've tried do it that way. But they don't.
>>
>> GUIs. So the workaround I finally found satisfies my current needs
>> ------------------------------------------------------------------------
>> *De :* Duncan Murdoch <murdoch.duncan using gmail.com>
>> *Envoy� :* mercredi 10 octobre 2018 22:07
>> *� :* Olivier GIVAUDAN; Jeff Newmiller
>> *Cc :* r-help using r-project.org
>> *Objet :* Re: [R] Genuine relative paths with R
>> On 10/10/2018 5:45 PM, Olivier GIVAUDAN wrote:
>>> I'm not sure I'm "inventing my own way" of distributing R code... And I
>>> distribute it to a very limited audience.
>>
>> Nothing says a package has to go on CRAN. You can distribute them
>> privately to a small audience.
>>
>>> Anyway, why not "inventing a new way" if it's more efficient than the
>>> standard one (I'm talking now in theory)?
>>
>> If you know as much about R as the people who wrote it, then you can
>> almost certainly invent better ways to do many of the things it does. R
>> Core was constrained by trying to maintain back compatibility, and that
>> means some of their solutions aren't perfect.
>>
>> But if you don't know it that well, chances are you'll make mistakes
>> when you invent your own way of doing it. For example, you might think
>> that all front ends set the working directory to the directory of the
>> program they are running, because the ones you've tried do it that way.
>> But they don't.
>>
>> Duncan Murdoch
>>
>>> ------------------------------------------------------------------------
>>> *De :* Duncan Murdoch <murdoch.duncan using gmail.com>
>>> *Envoy� :* mercredi 10 octobre 2018 21:39
>>> *� :* Olivier GIVAUDAN; Jeff Newmiller
>>> *Cc :* r-help using r-project.org
>>> *Objet :* Re: [R] Genuine relative paths with R
>>> On 10/10/2018 5:31 PM, Olivier GIVAUDAN wrote:
>>>> I do not want to use the terminal, just double clicks (i.e. the
>>>> simplest, automatic, non-manual way, without having to write a line /
>>>> command).
>>>> Therefore everything should happen outside any terminal. The user won't
>>>> use a terminal.
>>>>
>>>> I don't have a Mac and I'm not familiar with this OS, sorry.
>>>> But I'm really surprised the click method gives different results than
>>>> I know the click method worked both on Linux (Ubuntu latest version) and
>>>>
>>>> Yes, I executed my file from a terminal and got obviously the same
>>>> result as you (that's reassuring).
>>>>
>>>> Come on guys, creating a package... It's like using a hammer to kill a
>>>> fly...
>>>
>>> It's a simple operation to create a package in RStudio. Not quite a
>>> single click, but just a few.
>>>
>>> In plain R, it's just a little more work using package.skeleton().
>>>
>>> Really, if you are distributing R code, you should do it in the standard
>>> way, not invent your own.
>>>
>>> Duncan Murdoch
>>>
>>>> ------------------------------------------------------------------------
>>>> *De :* Duncan Murdoch <murdoch.duncan using gmail.com>
>>>> *Envoy� :* mercredi 10 octobre 2018 20:54
>>>> *� :* Olivier GIVAUDAN; Jeff Newmiller
>>>> *Cc :* r-help using r-project.org
>>>> *Objet :* Re: [R] Genuine relative paths with R
>>>> On 10/10/2018 4:42 PM, Olivier GIVAUDAN wrote:
>>>>> Why are you not simply double-clicking on 'TestPWD' and choosing to
>>>>> execute the file (don't add anything)?
>>>>> Are you executing the file from a terminal?
>>>>
>>>> Yes, I was executing the file from my terminal. Otherwise I really have
>>>> no idea what the "current directory" is in the Finder. (I'm on a Mac.
>>>> I just tried the click method; it printed my home directory, not the
>>>> directory of the script.)
>>>>
>>>> I don't know the name of your visual front end, but you are displaying
>>>> the working directory that it sets when you click on TestPWD. That will
>>>> be different from the working directory that your user sees in the Terminal.
>>>>
>>>> You can see what I saw if you run TestPWD from the Terminal. It will
>>>> print the current working directory, not the one where TestPWD happens
>>>> to live.
>>>>
>>>> If you want to do the same sort of thing in R, you could set up a script
>>>> that calls R, and execute that in the way you executed TestPWD. But in
>>>> another message you said you aren't allowed to do that, so I think your
>>>> best solution is the one offered by Bill Dunlap: organize your files as
>>>> an R package. If you name your package "Olivier", then you can find all
>>>> the files in it under the directory returned by
>>>>
>>>> system.file(".", package = "Olivier")
>>>>
>>>> The package system is designed for R code, but you can put arbitrary
>>>> files into a package: just store them under the "inst" directory in
>>>> your source. When the package is installed, those files will be moved
>>>> up one level, i.e.
>>>>
>>>> Olivier/inst/foo
>>>>
>>>> will become
>>>>
>>>> system.file("foo", package = "Olivier")
>>>>
>>>> Duncan Murdoch
>>>
>>
>
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