[R] non-linear optimisation ODE models

Thomas Petzoldt thpe at simecol.de
Sun Feb 26 12:55:59 CET 2017


fitting ODE models may also be done with package FME, see:

Soetaert K, Petzoldt T. Inverse modelling, sensitivity and Monte Carlo 
analysis in R using package FME. Journal of Statistical Software. 
2010(33): 1–28. http://dx.doi.org/10.18637/jss.v033.i03

or the (interactive) poster at:



Thomas P.

Am 16.02.2017 um 19:41 schrieb David Winsemius:
>> On Feb 15, 2017, at 1:43 PM, Jim Lemon <drjimlemon at gmail.com> wrote:
>> Hi Malgorzata,
>> The function "rxnrate" seems to want three values in a list with the
>> names "k1", "k2" and "k3". If you are passing something with different
>> names, it is probably going to complain, so the names "A", "B" and "C"
>> may be your problem. I can't run the example, so this is a guess.
> There's a more readable version at:
> http://stackoverflow.com/questions/42256509/how-to-feed-data-into-ide-while-doing-optimisation
> It can be run, but does not produce the errors offered when I do so.

More information about the R-help mailing list