[R] Facing problem in installing the package named "methyAnalysis"

[Martin Morgan]

On 12/29/2017 07:00 AM, Pijush Das wrote:
> Thank you Michael Dewey.
> Can you please send me the email id for Bioconductor.

https://support.bioconductor.org

Make sure you are using packages from a consistent version of Bioconductor

   source("https://bioconductor.org/biocLite.R")
   BiocInstaller::biocValid()

Martin

> 
> 
> 
> 
> regards
> Pijush
> 
> On Fri, Dec 29, 2017 at 5:20 PM, Michael Dewey <lists at dewey.myzen.co.uk>
> wrote:
> 
>> Dear Pijush
>>
>> You might do better to ask on the Bioconductor list as IRanges does not
>> seem to be on CRAN so I deduce it is a Bioconductor package too.
>>
>> Michael
>>
>>
>> On 29/12/2017 07:29, Pijush Das wrote:
>>
>>> Dear Sir,
>>>
>>>
>>>
>>>
>>> I have been using R for a long time. But recently I have faced a problem
>>> when installing the Bioconductor package named "methyAnalysis". Firstly it
>>> was require to update my older R (R version 3.4.3 (2017-11-30)) in to
>>> newer
>>> version. That time I have also updated the RStudio software.
>>>
>>> After that when I have tried to install the package named "methyAnalysis".
>>> It shows some error given below.
>>>
>>> No methods found in package ‘IRanges’ for requests: ‘%in%’,
>>> ‘elementLengths’, ‘elementMetadata’, ‘ifelse’, ‘queryHits’, ‘Rle’,
>>> ‘subjectHits’, ‘t’ when loading ‘bumphunter’
>>> Error: package or namespace load failed for ‘methyAnalysis’:
>>>    objects ‘.__T__split:base’, ‘split’ are not exported by
>>> 'namespace:IRanges'
>>> In addition: Warning message:
>>> replacing previous import ‘BiocGenerics::image’ by ‘graphics::image’ when
>>> loading ‘methylumi’
>>>
>>> I also try to install the package after downloading the source package
>>> from
>>> Bioconductor but the method is useless.
>>>
>>> Please help me to install the package named "methyAnalysis".
>>>
>>> Thanking you
>>>
>>>
>>>
>>> regards
>>> Pijush
>>>
>>>          [[alternative HTML version deleted]]
>>>
>>> ______________________________________________
>>> R-help at r-project.org mailing list -- To UNSUBSCRIBE and more, see
>>> https://stat.ethz.ch/mailman/listinfo/r-help
>>> PLEASE do read the posting guide http://www.R-project.org/posti
>>> ng-guide.html
>>> and provide commented, minimal, self-contained, reproducible code.
>>>
>>>
>> --
>> Michael
>> http://www.dewey.myzen.co.uk/home.html
>>
> 
> 	[[alternative HTML version deleted]]
> 
> ______________________________________________
> R-help at r-project.org mailing list -- To UNSUBSCRIBE and more, see
> https://stat.ethz.ch/mailman/listinfo/r-help
> PLEASE do read the posting guide http://www.R-project.org/posting-guide.html
> and provide commented, minimal, self-contained, reproducible code.
> 


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