[R] Antwort: Re: Antwort: Re: Antwort: Re: Installing from source on Windows 7: tibble [RE OPENED]
G.Maubach at weinwolf.de
G.Maubach at weinwolf.de
Thu Jun 30 08:35:50 CEST 2016
Hi Duncan,
I would not have changed the COMPILED_BY option unless I thought I have
to.
In my "C:\R-Project\Rtools\mingw_32\bin" I have
c++.exe
g++.exe
gcc.exe
i686-w64-mingw32-c++.exe
i686-w64-mingw32-g++.exe
i686-w64-mingw32-gcc-4.9.3.exe
i686-w64-mingw32-gcc.exe
In my "C:\R-Project\Rtools\mingw_64\bin" I have
c++.exe
cpp.exe
g++.exe
gcc.exe
x86_64-w64-mingw32-c++.exe
x86_64-w64-mingw32-g++.exe
x86_64-w64-mingw32-gcc-4.9.3.exe
x86_64-w64-mingw32-gcc.exe
Which one should I configure and use?
Kind regards
Georg
Von: Duncan Murdoch <murdoch.duncan at gmail.com>
An: G.Maubach at weinwolf.de,
Kopie: r-help at r-project.org
Datum: 29.06.2016 17:34
Betreff: Re: Antwort: Re: Antwort: Re: [R] Installing from source
on Windows 7: tibble [SOLVED]
On 29/06/2016 10:48 AM, G.Maubach at weinwolf.de wrote:
> Hi Duncan,
>
> indeed, I did not see the other part of your message.
>
> I did
>
> BINPREF ?= C:/R-Project/Rtools/mingw_32/bin/
> COMPILED_BY = g++ # instead of gcc-4.9.3
I wouldn't change the COMPILED_BY; some packages use it to configure
themselves for gcc-4.9.3, as opposed to the previous version gcc-4.6.3.
>
> in "C:\R-Project\R-3.3.0\etc\i386\Makeconf"
>
> and
>
> BINPREF ?= C:/R-Project/Rtools/mingw_64/bin/
> COMPILED_BY = g++ # instead of gcc-4.9.3
>
> in "C:\R-Project\R-3.3.0\etc\x64\Makeconf"
>
> Now I could compile the package with no futher errors.
>
> Messages are
>
> -- cut --
> * installing *source* package 'tibble' ...
> ** Paket 'tibble' erfolgreich entpackt und MD5 Summen überprüft
> ** libs
>
> *** arch - i386
> C:/R-Project/Rtools/mingw_32/bin/g++ -I"C:/R-PROJ~1/R-33~1.0/include"
> -DNDEBUG -I"C:/R-Project/R-3.3.0/library/Rcpp/include"
> -I"d:/Compiler/gcc-4.9.3/local330/include" -O2 -Wall -mtune=core2
-c
> RcppExports.cpp -o RcppExports.o
> C:/R-Project/Rtools/mingw_32/bin/g++ -I"C:/R-PROJ~1/R-33~1.0/include"
> -DNDEBUG -I"C:/R-Project/R-3.3.0/library/Rcpp/include"
> -I"d:/Compiler/gcc-4.9.3/local330/include" -O2 -Wall -mtune=core2
-c
> matrixToDataFrame.cpp -o matrixToDataFrame.o
> C:/R-Project/Rtools/mingw_32/bin/g++ -shared -s -static-libgcc -o
> tibble.dll tmp.def RcppExports.o matrixToDataFrame.o
> -Ld:/Compiler/gcc-4.9.3/local330/lib/i386
> -Ld:/Compiler/gcc-4.9.3/local330/lib -LC:/R-PROJ~1/R-33~1.0/bin/i386 -lR
> installing to C:/R-Project/R-3.3.0/library/tibble/libs/i386
>
> *** arch - x64
> C:/R-Project/Rtools/mingw_64/bin/g++ -I"C:/R-PROJ~1/R-33~1.0/include"
> -DNDEBUG -I"C:/R-Project/R-3.3.0/library/Rcpp/include"
> -I"d:/Compiler/gcc-4.9.3/local330/include" -O2 -Wall -mtune=core2
-c
> RcppExports.cpp -o RcppExports.o
> C:/R-Project/Rtools/mingw_64/bin/g++ -I"C:/R-PROJ~1/R-33~1.0/include"
> -DNDEBUG -I"C:/R-Project/R-3.3.0/library/Rcpp/include"
> -I"d:/Compiler/gcc-4.9.3/local330/include" -O2 -Wall -mtune=core2
-c
> matrixToDataFrame.cpp -o matrixToDataFrame.o
> C:/R-Project/Rtools/mingw_64/bin/g++ -shared -s -static-libgcc -o
> tibble.dll tmp.def RcppExports.o matrixToDataFrame.o
> -Ld:/Compiler/gcc-4.9.3/local330/lib/x64
> -Ld:/Compiler/gcc-4.9.3/local330/lib -LC:/R-PROJ~1/R-33~1.0/bin/x64 -lR
> installing to C:/R-Project/R-3.3.0/library/tibble/libs/x64
> ** R
> ** inst
> ** preparing package for lazy loading
> ** help
> *** installing help indices
> ** building package indices
> ** installing vignettes
> ** testing if installed package can be loaded
> *** arch - i386
> *** arch - x64
> * DONE (tibble)
> -- cut --
>
> So - complete success.
>
> Many thanks for your help.
>
> One last questions: Why did Rtools.exe not create a directory named
> "gcc-4.9.3" in "C:\R-Project\Rtools" and putting"
> C:\R-Project\Rtools\mingw_32" and "C:\R-Project\Rtools\mingw_64"
directly
> in "C:\R-Project\Rtools\"? gcc-4.6.3 was installed that way.
The 4.6.3 compiler was compiled for "multilib" operation: the same
compiler took command line options to distinguish between 32 bit and 64
bit compiles. The newer version doesn't support that, so we need two
separate installs.
Duncan Murdoch
> Kind regards
>
> Georg
>
>
>
>
>
> Von: Duncan Murdoch <murdoch.duncan at gmail.com>
> An: G.Maubach at weinwolf.de,
> Kopie: r-help at r-project.org
> Datum: 29.06.2016 16:21
> Betreff: Re: Antwort: Re: [R] Installing from source on Windows
7:
> tibble
>
>
>
> On 29/06/2016 10:17 AM, G.Maubach at weinwolf.de wrote:
> > Hi Duncan,
> >
> > many thanks for your reply.
> >
> > I did insert die paths to the g++ compiler because I got the message
> about
> > the not existent compiler.
> >
> > I took the directories for the compiler out again:
> >
> > C:\R-Project\Rtools\bin;C:\ProgramData\Oracle\Java\javapath;C:\Program
> > Files\Python 3.5\Scripts\;C:\Program Files\Python
> > 3.5\;C:\Python27\;C:\Python27\Scripts, etc. etc.
> >
> > Calling
> >
> > install.packages("tibble", type = "source")
> >
> >
> > gives this message:
> >
> > -- cut --
> > * installing *source* package 'tibble' ...
> > ** Paket 'tibble' erfolgreich entpackt und MD5 Summen überprüft
> > ** libs
> >
> > *** arch - i386
> > c:/Rtools/mingw_32/bin/g++ -I"C:/R-PROJ~1/R-33~1.0/include" -DNDEBUG
> > -I"C:/R-Project/R-3.3.0/library/Rcpp/include"
> > -I"d:/Compiler/gcc-4.9.3/local330/include" -O2 -Wall -mtune=core2
> -c
> > RcppExports.cpp -o RcppExports.o
> > c:/Rtools/mingw_32/bin/g++: not found
> > make: *** [RcppExports.o] Error 127
> > Warnung: Ausführung von Kommando 'make -f
> > "C:/R-PROJ~1/R-33~1.0/etc/i386/Makeconf" -f
> > "C:/R-PROJ~1/R-33~1.0/share/make/winshlib.mk"
> > SHLIB_LDFLAGS='$(SHLIB_CXXLDFLAGS)' SHLIB_LD='$(SHLIB_CXXLD)'
> > SHLIB="tibble.dll" OBJECTS="RcppExports.o matrixToDataFrame.o"' ergab
> > Status 2
> > ERROR: compilation failed for package 'tibble'
> > * removing 'C:/R-Project/R-3.3.0/library/tibble'
> > * restoring previous 'C:/R-Project/R-3.3.0/library/tibble'
> > Warning in install.packages :
> > running command '"C:/R-PROJ~1/R-33~1.0/bin/x64/R" CMD INSTALL -l
> > "C:\R-Project\R-3.3.0\library"
> >
>
C:\Users\MAUBAC~1.WEI\AppData\Local\Temp\RtmpGqOlOW/downloaded_packages/tibble_1.0.tar.gz'
> > had status 1
> > Warning in install.packages :
> > installation of package ‘tibble’ had non-zero exit status
> > -- cut --
> >
> > What else could I do?
>
> You seem to have missed the second part of my advice, describing what to
> do with the two Makeconf files.
>
> Duncan Murdoch
>
> >
> > Kind regards
> >
> > Georg
> >
> >
> >
> >
> >
> > Von: Duncan Murdoch <murdoch.duncan at gmail.com>
> > An: G.Maubach at weinwolf.de, r-help at r-project.org,
> > Datum: 29.06.2016 13:07
> > Betreff: Re: [R] Installing from source on Windows 7: tibble
> >
> >
> >
> > On 29/06/2016 5:49 AM, G.Maubach at weinwolf.de wrote:
> > > Hi All,
> > >
> > > I would like to install R packages from source on Windows 7 64-Bit.
> > > Currently my settings are:
> > >
> > > -- cut --
> > >> sessionInfo()
> > > R version 3.3.0 (2016-05-03)
> > > Platform: x86_64-w64-mingw32/x64 (64-bit)
> > > Running under: Windows 7 x64 (build 7601) Service Pack 1
> > >
> > > locale:
> > > [1] LC_COLLATE=German_Germany.1252 LC_CTYPE=German_Germany.1252
> > > [3] LC_MONETARY=German_Germany.1252 LC_NUMERIC=C
> > > [5] LC_TIME=German_Germany.1252
> > >
> > > attached base packages:
> > > [1] stats graphics grDevices utils datasets methods base
> > >
> > > loaded via a namespace (and not attached):
> > > [1] tools_3.3.0
> > > -- cut --
> > >
> > > The environment variable PATH on Windows 7 is set to:
> > >
> > >
> >
>
C:\R-Project\Rtools\mingw_32\bin;C:\R-Project\Rtools\mingw_64\bin;C:\R-Project\Rtools\bin;C:\R-Project\Rtools\gcc-4.6.3\bin;C:\Program
> > > Files\Python 3.5\Scripts\;C:\Program Files\Python
> > > 3.5\;C:\Python27\;C:\Python27\Scripts; etc. etc.
> >
> > Take the mingw_32, mingw_64 and gcc-4.6.3 directories off your path.
> > They aren't needed; the first two could conceivably be harmful.
> >
> > >
> > > RTools is installed in C:\R-Project\RTools
> > >
> > > The call of
> > >
> > > C:\R-Project\Rtools\mingw_64\bin\g++.exe --version
> > >
> > > results in
> > >
> > > g++ (x86_64-posix-seh, Built by MinGW-W64 project) 4.9.3
> > >
> > > If I do
> > >
> > >
> > >> install.packages("tibble", type = "source")
> > >
> > > I get
> > >
> > > -- cut --
> > > trying URL
> 'https://cran.uni-muenster.de/src/contrib/tibble_1.0.tar.gz'
> > > Content type 'application/x-gzip' length 38038 bytes (37 KB)
> > > downloaded 37 KB
> > >
> > > * installing *source* package 'tibble' ...
> > > ** Paket 'tibble' erfolgreich entpackt und MD5 Summen überprüft
> > > ** libs
> > >
> > > *** arch - i386
> > > c:/Rtools/mingw_32/bin/g++ -I"C:/R-PROJ~1/R-33~1.0/include"
-DNDEBUG
> > > -I"C:/R-Project/R-3.3.0/library/Rcpp/include"
> > > -I"d:/Compiler/gcc-4.9.3/local330/include" -O2 -Wall
-mtune=core2
> > -c
> > > RcppExports.cpp -o RcppExports.o
> > > c:/Rtools/mingw_32/bin/g++: not found
> > > make: *** [RcppExports.o] Error 127
> > > Warnung: Ausführung von Kommando 'make -f
> > > "C:/R-PROJ~1/R-33~1.0/etc/i386/Makeconf" -f
> > > "C:/R-PROJ~1/R-33~1.0/share/make/winshlib.mk"
> > > SHLIB_LDFLAGS='$(SHLIB_CXXLDFLAGS)' SHLIB_LD='$(SHLIB_CXXLD)'
> > > SHLIB="tibble.dll" OBJECTS="RcppExports.o matrixToDataFrame.o"'
ergab
> > > Status 2
> > > ERROR: compilation failed for package 'tibble'
> > > * removing 'C:/R-Project/R-3.3.0/library/tibble'
> > > * restoring previous 'C:/R-Project/R-3.3.0/library/tibble'
> > > Warning in install.packages :
> > > running command '"C:/R-PROJ~1/R-33~1.0/bin/x64/R" CMD INSTALL -l
> > > "C:\R-Project\R-3.3.0\library"
> > >
> >
>
C:\Users\MAUBAC~1.WEI\AppData\Local\Temp\Rtmp23SQxM/downloaded_packages/tibble_1.0.tar.gz'
> > > had status 1
> > > Warning in install.packages :
> > > installation of package ‘tibble’ had non-zero exit status
> > > -- cut --
> > >
> > > There is no make.conf in "C:\R-Project\Rtools\mingw_64\etc". I found
"
> > > Makeconf" in "C:\R-Project\R-3.3.0\etc\x64". Do I need it? How do I
> need
> > > to configure the settings in this file?
> >
> > Yes, since you haven't installed Rtools in the default location, you
> > should edit two Makeconf files. In
> > C:\R-Project\R-3.3.0\etc\x64\Makeconf, you want
> >
> > BINPREF ?= c:/R-project/Rtools/gcc-4.9.3/mingw_64/bin/
> >
> > and in C:\R-Project\R-3.3.0\etc\i386\Makeconf you want
> >
> > BINPREF ?= c:/R-project/Rtools/gcc-4.9.3/mingw_32/bin/
> >
> > You need to make sure you don't have an environment variable named
> > BINPREF defined, or it will override these settings. (If you were
> > building just one architecture, you could do the setting by
environment
> > variable, but not if you are trying to build both archs in one call.)
> >
> > Duncan Murdoch
> >
> > >
> > > I searched old aunt Google but did not understand what to do and how
> to
> > > configure R environment variables correctly.
> > >
> > > What do I need to do to install packages from source?
> > >
> > > Kind regards
> > >
> > > Georg
> > >
> > >
> > > ______________________________________________
> > > R-help at r-project.org mailing list -- To UNSUBSCRIBE and more, see
> > > https://stat.ethz.ch/mailman/listinfo/r-help
> > > PLEASE do read the posting guide
> > http://www.R-project.org/posting-guide.html
> > > and provide commented, minimal, self-contained, reproducible code.
> > >
> >
> >
> >
>
>
>
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