[R] install the Bioconductor package “yeastExpData”

[Bert Gunter]

It looks like a permissions problem. You might want to check with your
local IT support.

Cheers,
Bert


Bert Gunter

"The trouble with having an open mind is that people keep coming along
and sticking things into it."
-- Opus (aka Berkeley Breathed in his "Bloom County" comic strip )


On Fri, Dec 16, 2016 at 6:33 AM, AbouEl-Makarim Aboueissa
<abouelmakarim1962 at gmail.com> wrote:
> Dear All:
>
> I am trying to install the Bioconductor package “yeastExpData”. By the end
> I got an error message, please see below. I am not sure what is wrong.
>
>
>> source("http://bioconductor.org/biocLite.R")
> Bioconductor version 3.0 (BiocInstaller 1.16.5), ?biocLite for help
> A new version of Bioconductor is available after installing the most recent
>   version of R; see http://bioconductor.org/install
>> biocLite("yeastExpData")
> BioC_mirror: http://bioconductor.org
> Using Bioconductor version 3.0 (BiocInstaller 1.16.5), R version 3.1.2.
> Installing package(s) 'yeastExpData'
> also installing the dependency ‘graph’
>
> trying URL '
> http://bioconductor.org/packages/3.0/bioc/bin/windows/contrib/3.1/graph_1.44.1.zip
> '
> Content type 'application/zip' length 2746668 bytes (2.6 Mb)
> opened URL
> downloaded 2.6 Mb
>
> trying URL '
> http://bioconductor.org/packages/3.0/data/experiment/bin/windows/contrib/3.1/yeastExpData_0.11.1.zip
> '
> Content type 'application/zip' length 1936545 bytes (1.8 Mb)
> opened URL
> downloaded 1.8 Mb
>
> package ‘graph’ successfully unpacked and MD5 sums checked
> package ‘yeastExpData’ successfully unpacked and MD5 sums checked
>
> The downloaded binary packages are in
>
> C:\Users\aaboueissa\AppData\Local\Temp\RtmpYNOhi3\downloaded_packages
> Old packages: 'boot', 'class', 'cluster', 'codetools', 'foreign',
> 'KernSmooth',
>   'lattice', 'MASS', 'Matrix', 'mgcv', 'nlme', 'nnet', 'rpart', 'spatial',
>   'survival'
> *Update all/some/none? [a/s/n]: a*
> *Warning in install.packages(update[instlib == l, "Package"], l, contriburl
> = contriburl,  :*
> *  'lib = "C:/Program Files/R/R-3.1.2/library"' is not writable*
> *Error in install.packages(update[instlib == l, "Package"], l, contriburl =
> contriburl,  : *
> *  unable to install packages*
>> library("yeastExpData")
> Loading required package: graph
>>
>
>
>
> with thanks
> abou
>
> --
> ______________________
> AbouEl-Makarim Aboueissa, PhD
> University of Southern Maine
> Department of Mathematics and Statistics
>
>         [[alternative HTML version deleted]]
>
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