[R] the functionality of outputing junction reads in Rsubread package

[Jeff Newmiller]

This belongs in an email to the Rsubread maintainers, e.g. maintainer("Rsubread"), or on the Bioconductor mailing list.
---------------------------------------------------------------------------
Jeff Newmiller                        The     .....       .....  Go Live...
DCN:<jdnewmil at dcn.davis.ca.us>        Basics: ##.#.       ##.#.  Live Go...
                                      Live:   OO#.. Dead: OO#..  Playing
Research Engineer (Solar/Batteries            O.O#.       #.O#.  with
/Software/Embedded Controllers)               .OO#.       .OO#.  rocks...1k
--------------------------------------------------------------------------- 
Sent from my phone. Please excuse my brevity.

On September 11, 2015 12:35:46 PM PDT, "Wang, Xue, Ph.D." <Wang.Xue at mayo.edu> wrote:
>Hi Rsubread developers and R users,
>
>I am using R version 3.1 and the associated "Rsubread" Bioconductor
>package. The "subjunc" function allows the user to output junction
>reads in the following format, 
>
>#Chr, StartLeftBlock, EndRightBlock, Junction_Name, nSupport, Strand,
>StartLeftBlock, EndRightBlock, Color, nBlocks, BlockSizes, BlockStarts
>chr10	94009	94602	JUNC00000001	251	+	94009	94602	255,0,0		2	46,47	0,546
>chr10
>	94822	95396	JUNC00000002	993	-	94822	95396	0,255,255	2	30,49	0,525
>
>My question is, for the second last column (BlockSizes column), is
>there a way to modify the default maximum block size from 49 to other
>value (e.g. 20)? I understand this may involve the modification of
>source C code and re-compilation.
>
>
>Thanks,
>
>
>Xue 
>    
>
>______________________________________________
>R-help at r-project.org mailing list -- To UNSUBSCRIBE and more, see
>https://stat.ethz.ch/mailman/listinfo/r-help
>PLEASE do read the posting guide
>http://www.R-project.org/posting-guide.html
>and provide commented, minimal, self-contained, reproducible code.