[R] JAGS 4.x, rjags 4.x problems | Linux
Evan Cooch
evan.cooch at gmail.com
Wed Nov 4 20:08:47 CET 2015
Greetings --
This has also been posted on the jags forum, but since I suspect the
problem is more 'R-related' than jags, will aos post here.
Decided to 'upgrade' from jags 3.x.x to 4.x.x today, on my GNU/Linux
boxes (which run latest RHEL). Here are the basic details:
1\ used R 3.2.2 compiled from source. 64-bit -- nothing fancy, other
than the fact that I used OpenBLAS instead of 'generic'. Works fine.
2\ downloaded and compiled JAGS 4.0.1 from source (nothing fancy,
./configure & make & make install) -- no errors. Runs fine as a
standalone app from CLI.
3\ Downloaded rjags_4-3.tar.gz, and installed from R CLI (within R --
usual R CMD INSTALL approach). Again, no errors reported.
However, when I fire up R, and try something simple like
library(R2jags)
I get a whole slew of error messages - following is reproducible on all
my machines:
Loading required package: rjags
Loading required package: coda
Error : .onLoad failed in loadNamespace() for 'rjags', details:
call: dyn.load(file, DLLpath = DLLpath, ...)
error: unable to load shared object
'/usr/lib64/R/library/rjags/libs/rjags.so':
libjags.so.3: cannot open shared object file: No such file or directory
Error: package ‘rjags’ could not be loaded
Meaning, what? I checked, and rjags.so is where its supposed to be.If I run
R CMD ldd /usr/lib64/R/library/rjags/libs/rjags.so
no failures at any point.
Suggestions? Pointers to the obvious?
Thanks very much in advance.
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