[R] Installing GO.db Package in R

Zaynab Mousavian zaynabmousavian at gmail.com
Thu Mar 5 10:21:19 CET 2015

Hi all,

I have tried to install GO.db package in R, but the following error is
given to me:

BioC_mirror: http://bioconductor.org
Using Bioconductor version 2.13 (BiocInstaller 1.12.1), R version 3.0.2.
Installing package(s) 'GO.db'
trying URL
Content type 'application/x-gzip' length 26094175 bytes (24.9 Mb)
opened URL==================================================
downloaded 24.9 Mb
* installing *source* package âGO.dbâ ...** R** inst** preparing
package for lazy loading** help*** installing help indices** building
package indices** testing if installed package can be loaded
Error : .onLoad failed in loadNamespace() for 'GO.db', details:
call: match.arg(synchronous, c("off", "normal", "full"))
error: 'arg' must be NULL or a character vector
Error: loading failed
Execution halted
ERROR: loading failed* removing

The downloaded source packages are in
Warning messages:1: In install.packages(pkgs = pkgs, lib = lib, repos
= repos, ...) :
installation of package âGO.dbâ had non-zero exit status2: installed
directory not writable, cannot update packages 'colorspace','lattice',
'mgcv', 'survival'

Can anyone help me to install it?

Zaynab Mousavian, Ph.D. student

Laboratory of Systems Biology and Bioinformatics
Institute of Biochemistry and Biophysics, University of
Tehran, Iran
Web: *http://LBB.ut.ac.ir <http://LBB.ut.ac.ir>*
Email: zmousavian at ut.ac.ir

	[[alternative HTML version deleted]]

More information about the R-help mailing list