[R] Calculating Kendall's tau

S Ellison S.Ellison at LGCGroup.com
Thu Apr 2 16:06:01 CEST 2015

> I am analyzing trend  using Mann-kendall  test for 31 independent sample, each
> sample  have 34 years dataset.  I supposed to find Kendall “tau” for each
> sample. The data is arranged in column wise (I attached  the data).To find
> Kendall tau, I wrote R script as:
> ...
> Anyone can tell me how can I get orderly displayed  “tau” value? 

Usually, in R, a hypothesis test returns an object, and you can extract an individual element of that object.

MannKendall seems to be no exception. Looking at the help page, a MannKendall test returns...
" A list with class Kendall.
tau 	Kendall’s tau statistic
sl 	two-sided p-value
S	Kendall Score
D	denominator, tau=S/D
varS	variance of S"

To get just tau, say something like MannKendalltau[i]<-MannKendall(y[,i])$tau

But your code is a bit of a mess....
MannKendalltau<- numeric(nc) simply makes MannKendalltau a single integer equal to nc; that doesn't look sensible when the next thing you do is treat MannKendalltau as a vector. R's been kind to you and extended MannKendalltau when you tried to add things to later, non-existent, elements, but it clearly wasn't the right thing to do. Look up ?numeric, and then look up ?vector for next time you want to set up an empty vector.

Second, since MannKendall(y[,i]) ) returns a list object of class Kendall, MannKendalltau[i]<-MannKendall(y[,i]) assigns a whole  object containing 5 values to each new element of your MannKendalltau. So your result is a list of lists.

Finally, you don’t need a loop at all. On a data frame, sapply would work nicely, so (although I've not tested it) something like

sapply(desta[,2:nc], 2, function(x) ManKendall(x)$tau)

ought to do the whole thing in one shot and package it nicely into a named vector while it's about it.

S Ellison

This email and any attachments are confidential. Any use, copying or
disclosure other than by the intended recipient is unauthorised. If 
you have received this message in error, please notify the sender 
immediately via +44(0)20 8943 7000 or notify postmaster at lgcgroup.com 
and delete this message and any copies from your computer and network. 
LGC Limited. Registered in England 2991879. 
Registered office: Queens Road, Teddington, Middlesex, TW11 0LY, UK

More information about the R-help mailing list