[R] error in rownames

Thu Sep 25 17:06:24 CEST 2014

Chris,

You are not making it easy for R help folks to help you.

You need to supply *** reproducible *** code, so that folks can simply copy
and paste directly from your e-mail to R and reproduce the error that you
are getting.  Do you need a guide to follow?  See the first 60-some lines
of code provided in the example of the help for AsciiGridImpute,
     ?AsciiGridImpute
I can copy that code into R and make it run.  You need to do the same thing
in your e-mail.  Don't refer to directories on your PC.

I submitted a simplified version of the code you shared (below), but ran
into an error because the *.asc files were not already created.  So, I
suggest that you insert some general code to get that done for your
example, and resubmit your question.

Jean

training <- structure(list(CID = c(0L, 0L, 0L, 0L, 0L,
0L, 0L, 0L, 0L, 0L,
0L, 0L, 0L, 0L, 0L, 0L, 0L, 0L, 0L, 0L), cosaspect = c(-0.402376,
-0.263312, -0.978401, 0.0364174, 0.975655, -0.954148, -0.982731,
0.949282, -0.827262, -0.300375, -0.211474, -0.63658, 0.892831,
-0.0395686, 0.649339, 0.0129927, -0.428111, -0.970759, 0.891974,
-0.901187), disttoroad = c(475.928, 245.003, 671.958, 10.3074,
384.839, 180.305, 620.157, 290.441, 587.61, 72.1515, 10.3074,
43.7304, 20.6147, 10.3074, 428.717, 72.884, 106.121, 175.225,
249.302, 30.9221), disttowat = c(535.685, 309.907, 291.536, 1039.97,
258.507, 202.508, 387.315, 1233.18, 666.481, 457.721, 1553.81,
679.505, 1115.53, 515.162, 692.974, 498.604, 204.075, 388.138,
885.474, 343.097), elevation = c(1901.69, 1992.82, 1911.9, 1985.14,
1979.67, 1870.83, 1909.5, 2111.45, 1913.09, 1922.76, 1996.68,
2092.64, 2066.89, 1872.85, 2047.7, 1923.03, 1981.28, 1875.6,
2074.82, 1866.82), habitat = c(2L, 5L, 2L, 10L, 1L, 2L, 2L, 3L,
2L, 16L, 3L, 3L, 1L, 4L, 1L, 5L, 6L, 2L, 3L, 10L), sinaspect = c(0.915474,
-0.964711, 0.206717, 0.999337, 0.21931, -0.299336, -0.185039,
-0.314428, -0.561817, -0.953821, -0.977384, -0.771211, -0.450392,
-0.999217, -0.760499, 0.999916, 0.903726, -0.240057, -0.452087,
-0.433431), slope = c(0.768307, 11.4002, 1.34928, 3.42667, 19.6776,
0.341443, 3.14869, 7.14637, 1.1572, 24.4974, 11.0014, 19.4188,
16.3333, 5.23936, 9.95699, 17.1475, 21.374, 0.475218, 7.23375,
0.29158), POINT_X = c(517098.970249, 517940.940865, 517526.253849,
516073.554503, 516019.068701, 515506.165434, 517353.141738, 520076.487742,
517973.141394, 516823.388106, 514784.035218, 518298.237046, 519796.43389,
515714.490202, 518829.909017, 519385.491579, 518659.851297, 516654.780318,
519063.701155, 516270.975247), POINT_Y = c(4818385.61487, 4816762.97919,
4819015.00611, 4816604.93198, 4814958.09214, 4813316.65912, 4818923.42436,
4819217.24161, 4820124.20539, 4814172.9439, 4815372.65581, 4816674.91138,
4819393.11718, 4812616.30708, 4818780.85554, 4816287.01774, 4814503.57051,
4813614.51134, 4818804.92703, 4812168.6041), ResponseSu = c(1.822784,
398.591262, 5.565648, 69.106734, 235.114325, 2.162961, 8.170528,
389.107013, 11.32454, 4880.467707, 192.215083, 160.17186, 91.843573,
63.863233, 113.728819, 100.03871, 1288.273717, 14.032336, 141.478417,
10.020201)), .Names = c("CID", "cosaspect", "disttoroad", "disttowat",
"elevation", "habitat", "sinaspect", "slope", "POINT_X", "POINT_Y",
"ResponseSu"), row.names = c(NA, 20L), class = "data.frame")

library(yaImpute)

y <- subset(training, select = c(ResponseSu))
x <- subset(training, select = c(sinaspect, habitat, elevation, disttowat,
disttoroad, slope, cosaspect))
type.rf <- yai(x=x, y=y, method="randomForest", rfMode="regression",
ntree=20)
outfile <- list(Type="RespSurf_Reg.asc")
xfile <-list(sinaspect="sinaspect.asc", habitat="habitat.asc",
elevation="elevation.asc",
disttowat="disttowat.asc", disttoroad="disttoroad.asc", slope="slope.asc",
cosaspect="cosaspect.asc")

# insert lines of code here to create the *.asc files
# see the example with the iris data in ?AsciiGridImpute

AsciiGridImpute(type.rf, xfile, outfile)

On Mon, Sep 22, 2014 at 11:13 AM, Chris Jackson-Jordan <
jacksonjordancm at gmail.com> wrote:

> Dear fellow R users,
>
> I am trying to run the random forest and Yaimpute packages in R to
> impute a grid to project in a gis. However, after running the
> imputation I keep getting an error in the rownames. This sounds simple
> enough, but I cannot figure out what these rownames are reffering to.
> Any ideas? I am fairly new to R so im sure it is an easy fix. Any help
> would be awesome.
>
> Thanks,
>
> Chris
>
>
> > y <- subset(training, select = c(ResponseSu)) > x <- subset(training,
> select = c(sinaspect, habitat, slope, elevation, cosaspect, disttoroad,
> disttowat)) > type.rf <- yai(x=x, y=y, method="randomForest",
> rfMode="regression", ntree= 2000) > outfile <- list(Type =
> "D:/R_Desktop_Data/RF_RespSurf/RespSurf_Reg.asc") > xfile <-list(sinaspect
>
> ="C:/Users/jacksonjordancm/Desktop/R_Desktop_Data/RF_NNimp/ModelI/ASCII_Files2/sinaspect.asc",
> habitat
>
> ="C:/Users/jacksonjordancm/Desktop/R_Desktop_Data/RF_NNimp/ModelI/ASCII_Files2/habitat.asc",
> elevation
>
> ="C:/Users/jacksonjordancm/Desktop/R_Desktop_Data/RF_NNimp/ModelI/ASCII_Files2/elevation.asc",
> disttowat
>
> ="C:/Users/jacksonjordancm/Desktop/R_Desktop_Data/RF_NNimp/ModelI/ASCII_Files2/disttowat.asc",
> disttoroad
>
> ="C:/Users/jacksonjordancm/Desktop/R_Desktop_Data/RF_NNimp/ModelI/ASCII_Files2/disttoroad.asc",
> slope
>
> ="C:/Users/jacksonjordancm/Desktop/R_Desktop_Data/RF_NNimp/ModelI/ASCII_Files2/slope.asc",
> cosaspect
>
> ="C:/Users/jacksonjordancm/Desktop/R_Desktop_Data/RF_NNimp/ModelI/ASCII_Files2/cosaspect.asc")
> > AsciiGridImpute(type.rf, xfile, outfile) Rows per dot: 19 Rows to do:
> 1900 ToDo:
>
> ....................................................................................................
> Done: . Error in `rownames<-`(`*tmp*`, value = c("23x0049", "23x0050",
> "23x0051", : attempt to set rownames on object with no dimensions
>
> here is an example of my training data
>
>
>  > dput(training[1:20, ])structure(list(CID = c(0L, 0L, 0L, 0L, 0L,
> 0L, 0L, 0L, 0L, 0L,
> 0L, 0L, 0L, 0L, 0L, 0L, 0L, 0L, 0L, 0L), cosaspect = c(-0.402376,
> -0.263312, -0.978401, 0.0364174, 0.975655, -0.954148, -0.982731,
> 0.949282, -0.827262, -0.300375, -0.211474, -0.63658, 0.892831,
> -0.0395686, 0.649339, 0.0129927, -0.428111, -0.970759, 0.891974,
> -0.901187), disttoroad = c(475.928, 245.003, 671.958, 10.3074,
> 384.839, 180.305, 620.157, 290.441, 587.61, 72.1515, 10.3074,
> 43.7304, 20.6147, 10.3074, 428.717, 72.884, 106.121, 175.225,
> 249.302, 30.9221), disttowat = c(535.685, 309.907, 291.536, 1039.97,
> 258.507, 202.508, 387.315, 1233.18, 666.481, 457.721, 1553.81,
> 679.505, 1115.53, 515.162, 692.974, 498.604, 204.075, 388.138,
> 885.474, 343.097), elevation = c(1901.69, 1992.82, 1911.9, 1985.14,
> 1979.67, 1870.83, 1909.5, 2111.45, 1913.09, 1922.76, 1996.68,
> 2092.64, 2066.89, 1872.85, 2047.7, 1923.03, 1981.28, 1875.6,
> 2074.82, 1866.82), habitat = c(2L, 5L, 2L, 10L, 1L, 2L, 2L, 3L,
> 2L, 16L, 3L, 3L, 1L, 4L, 1L, 5L, 6L, 2L, 3L, 10L), sinaspect = c(0.915474,
> -0.964711, 0.206717, 0.999337, 0.21931, -0.299336, -0.185039,
> -0.314428, -0.561817, -0.953821, -0.977384, -0.771211, -0.450392,
> -0.999217, -0.760499, 0.999916, 0.903726, -0.240057, -0.452087,
> -0.433431), slope = c(0.768307, 11.4002, 1.34928, 3.42667, 19.6776,
> 0.341443, 3.14869, 7.14637, 1.1572, 24.4974, 11.0014, 19.4188,
> 16.3333, 5.23936, 9.95699, 17.1475, 21.374, 0.475218, 7.23375,
> 0.29158), POINT_X = c(517098.970249, 517940.940865, 517526.253849,
> 516073.554503, 516019.068701, 515506.165434, 517353.141738, 520076.487742,
> 517973.141394, 516823.388106, 514784.035218, 518298.237046, 519796.43389,
> 515714.490202, 518829.909017, 519385.491579, 518659.851297, 516654.780318,
> 519063.701155, 516270.975247), POINT_Y = c(4818385.61487, 4816762.97919,
> 4819015.00611, 4816604.93198, 4814958.09214, 4813316.65912, 4818923.42436,
> 4819217.24161, 4820124.20539, 4814172.9439, 4815372.65581, 4816674.91138,
> 4819393.11718, 4812616.30708, 4818780.85554, 4816287.01774, 4814503.57051,
> 4813614.51134, 4818804.92703, 4812168.6041), ResponseSu = c(1.822784,
> 398.591262, 5.565648, 69.106734, 235.114325, 2.162961, 8.170528,
> 389.107013, 11.32454, 4880.467707, 192.215083, 160.17186, 91.843573,
> 63.863233, 113.728819, 100.03871, 1288.273717, 14.032336, 141.478417,
> 10.020201)), .Names = c("CID", "cosaspect", "disttoroad", "disttowat",
> "elevation", "habitat", "sinaspect", "slope", "POINT_X", "POINT_Y",
> "ResponseSu"), row.names = c(NA, 20L), class = "data.frame")>
> library("randomForest", lib.loc="~/RStudio/R/library")
>
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>
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