[R] How to extract last value in each group
Steve Lianoglou
lianoglou.steve at gene.com
Fri Aug 16 05:28:34 CEST 2013
Hi,
On Thu, Aug 15, 2013 at 4:03 PM, arun <smartpink111 at yahoo.com> wrote:
> HI Steve,
>
> Thanks for testing.
>
> When I run a slightly bigger dataset:
> set.seed(1254)
> name<- sample(letters,1e7,replace=TRUE)
> number<- sample(1:10,1e7,replace=TRUE)
>
> datTest<- data.frame(name,number,stringsAsFactors=FALSE)
> library(data.table)
>
> dtTest<- data.table(datTest)
>
> system.time(res3<- dtTest[,list(Sum_Number=sum(number)),by=name])
> #user system elapsed
> # 0.592 0.028 0.623
>
> #Then I tried this:
>
> dtTest1<- data.table(datTest,key=name)
> #Error: C stack usage is too close to the limit
>
> Cstack_info()
> # size current direction eval_depth
> # 8388608 7320 1 2
Do you get this stack problem if you quote `name`, eg:
R> dtTest1 <- data.table(datTest, key="name")
?
Perhaps we should move this to data.table-help if you want to debug
further, though:
https://lists.r-forge.r-project.org/cgi-bin/mailman/listinfo/datatable-help
-steve
--
Steve Lianoglou
Computational Biologist
Bioinformatics and Computational Biology
Genentech
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