[R] GOstats: get genes for corresponding enriched GO term

arun smartpink111 at yahoo.com
Sat Jul 21 03:15:39 CEST 2012


I guess this should be posted in the bioconductor mailing list to get better response.  I never used Gostats before, but I think BINGO and DAVID are very good in giving these information. I would choose BINGO plugin in cytoscape installed.  But, you may have specific reasons to use Gostats.  


----- Original Message -----
From: Lan Sky <xiaskyer at gmail.com>
To: r-help at r-project.org
Sent: Friday, July 20, 2012 8:29 PM
Subject: [R] GOstats: get genes for corresponding enriched GO term


I used GOstats to perform enrichment test on a set of genes (20).
There are 7 GO terms with pvalue less than cuttoff and therefore shown in
the result table.

How can I get the information that which gene in the input gene set belong
to which GO term of these enriched GO terms?

Thanks for any comments.


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