[R] JGR Segmentation fault

dberringer doug.berringer at gmail.com
Fri Feb 24 08:41:03 CET 2012


Ok.  So I'm a little closer to figuring this thing out.  I didn't realize I
needed to run the javareconf command as root like so.

sudo R CMD javareconf
JAVA_CPPFLAGS=-I/System/Library/Frameworks/JavaVM.framework/Headers

I'm not getting the permission issue anymore but  I'm still getting the
segmentation fault error:

=> /Users/User/jgrLaunch ; exit;
Loading preferences from /Users/User/.JGRprefsrc
JGR R_HOME: /usr/local/Cellar/r/2.14.1/R.framework/Resources
libroot:
/usr/local/Cellar/r/2.14.1/R.framework/Versions/2.14/Resources/library/
Attempting to load jnilib:
/usr/local/Cellar/r/2.14.1/R.framework/Versions/2.14/Resources/library/rJava/jri/libjri.jnilib
Segmentation fault
logout

[Process completed]

I also got this error from the R console:

Feb 23 22:50:59 grizz R[46063] <Error>: kCGErrorInvalidConnection:
CGSGetWindowTags: Invalid connection
Feb 23 22:50:59 grizz R[46063] <Error>: kCGErrorFailure: Set a breakpoint @
CGErrorBreakpoint() to catch errors as they are logged.
Feb 23 23:07:44 grizz R[46063] <Error>: kCGErrorInvalidConnection:
CGSGetWindowTags: Invalid connection

Any help would be awesome.

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