[R] StepAIC and boxplot
David martin
vilanew at gmail.com
Fri Nov 18 15:34:54 CET 2011
Hello,
I have done a stepwise analysis to determine the best model fitting my data.
data <- stepAIC( aov (Group)~ . , data=mydata)
data
> summary(data)
Df Sum Sq Mean Sq F value Pr(>F)
`a` 1 1.9829 1.98290 11.176 0.0011824 **
`b` 1 2.6606 2.66064 14.996 0.0001967 ***
`c` 1 2.0339 2.03394 11.464 0.0010295 **
Residuals 96 17.0325 0.17742
---
> data$anova
Stepwise Model Path
Analysis of Deviance Table
Initial Model:
as.integer(Group) ~ `a` + `b` + `c` +
`d` + `e` + `f`
Final Model:
as.integer(Group) ~ `a` + `b` + `c`
Step Df Deviance Resid. Df Resid. Dev AIC
1 93 16.83679 -164.1604
2 - `d` 1 0.01387782 94 16.85067 -166.0780
3 - `e` 1 0.09713881 95 16.94781 -167.5032
4 - `f` 1 0.08471704 96 17.03252 -169.0046
>
I would like to do a boxplot of the data so that i visualize the model.
How can i boxplot the model ('a'+'b'+'c') directly ??
thanks,
david
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