[R] functions pandit and treebase in the package apTreeshape

[Andrew Robinson]

Thanks!  As noted by an earlier poster, these functions seem to have
been removed from the package.  It might be worth contacting the
maintainer to ask if any equivalents are available ...

Cheers

Andrew

On Sat, May 07, 2011 at 09:56:49AM +0200, Arnau Mir wrote:
> El 07/05/11 09:49, Arnau Mir escribió:
> >El 06/05/11 01:33, Andrew Robinson escribió:
> >>Hi Arnau,
> >>
> >>please send the output of sessionInfo() and the exact commands and
> >>response that you used to install and load apTreeshape.
> >>
> >
> 
> Sorry, I forgot the commands.
> Here they are:
> 
> > library(apTreeshape)
> Loading required package: ape
> Loading required package: quantreg
> Loading required package: SparseM
> Package SparseM (0.89) loaded.
>        To cite, see citation("SparseM")
> 
> 
> Attaching package: 'SparseM'
> 
> The following object(s) are masked from 'package:base':
> 
>     backsolve
> 
> Package quantreg (4.67) loaded.
>         To cite, see citation("quantreg")
> 
> > pandit(2)
> Error: no se pudo encontrar la función "pandit"
> (the function "pandit" cannot be found)
> > treebase(2)
> Error: no se pudo encontrar la función "treebase"
> (the function treebase cannot be found)
> > sessionInfo()
> 
> 
> Arnau.
> 
> >Here It is:
> >
> >> sessionInfo()
> >R version 2.12.1 (2010-12-16)
> >Platform: x86_64-pc-linux-gnu (64-bit)
> >
> >locale:
> > [1] LC_CTYPE=es_ES.UTF-8       LC_NUMERIC=C
> > [3] LC_TIME=es_ES.UTF-8        LC_COLLATE=es_ES.UTF-8
> > [5] LC_MONETARY=C              LC_MESSAGES=es_ES.UTF-8
> > [7] LC_PAPER=es_ES.UTF-8       LC_NAME=C
> > [9] LC_ADDRESS=C               LC_TELEPHONE=C
> >[11] LC_MEASUREMENT=es_ES.UTF-8 LC_IDENTIFICATION=C
> >
> >attached base packages:
> >[1] stats     graphics  grDevices utils     datasets  methods   base
> >
> >other attached packages:
> >[1] quantreg_4.67     SparseM_0.89      ape_2.5-3         
> >apTreeshape_1.4-3
> >
> >loaded via a namespace (and not attached):
> >[1] gee_4.13-14     grid_2.12.1     lattice_0.19-17 nlme_3.1-97
> >
> >
> >Arnau.
> >
> >>Cheers
> >>
> >>Andrew
> >>
> >>On Thu, May 05, 2011 at 04:42:58PM +0200, Arnau Mir wrote:
> >>>Hello.
> >>>
> >>>I'm trying to use the functions pandit and treebase. They are in the 
> >>>package apTreeshape. Once I've loaded the package, R responses:
> >>>
> >>>- no function pandit/treebase.
> >>>
> >>>Somebody knows why or what is the reason?
> >>>
> >>>
> >>>Thanks,
> >>>
> >>>Arnau.
> >>>------------------------------------------------------------
> >>>Arnau Mir Torres
> >>>Edifici A. Turmeda
> >>>Campus UIB
> >>>Ctra. Valldemossa, km. 7,5
> >>>07122 Palma de Mca.
> >>>tel: (+34) 971172987
> >>>fax: (+34) 971173003
> >>>email: arnau.mir at uib.es
> >>>URL: http://dmi.uib.es/~arnau
> >>>------------------------------------------------------------
> >>>
> >>>
> >>>    [[alternative HTML version deleted]]
> >>>
> >>>______________________________________________
> >>>R-help at r-project.org mailing list
> >>>https://stat.ethz.ch/mailman/listinfo/r-help
> >>>PLEASE do read the posting guide 
> >>>http://www.R-project.org/posting-guide.html
> >>>and provide commented, minimal, self-contained, reproducible code.
> >
> >
> 
> 
> -- 
> ------------------------------------------------------------
> Arnau Mir Torres
> Edifici A. Turmeda
> Campus UIB
> Ctra. Valldemossa, km. 7,5
> 07122 Palma de Mca.
> tel: (+34) 971172987
> fax: (+34) 971173003
> email: arnau.mir at uib.es
> URL: http://dmi.uib.es/~arnau
> ------------------------------------------------------------

-- 
Andrew Robinson  
Program Manager, ACERA 
Department of Mathematics and Statistics            Tel: +61-3-8344-6410
University of Melbourne, VIC 3010 Australia               (prefer email)
http://www.ms.unimelb.edu.au/~andrewpr              Fax: +61-3-8344-4599
http://www.acera.unimelb.edu.au/

Forest Analytics with R (Springer, 2011) 
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Introduction to Scientific Programming and Simulation using R (CRC, 2009): 
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