[R] Compiling Rgraphiz on Windows 7 64bit with R-2.13.0

Wed May 4 02:01:35 CEST 2011

On 05/03/2011 03:23 PM, Ben Rhelp wrote:
> Hi all,
>
> I am trying to compile Rgraphiz on Windows 7 64bit with R-2.13.0. I have
> installed
>
> Rtools213.exe from [1]. The 64bit packages in [2] provided me with the 64 bit
> version
> of graphviz. After intalling the binary version Rgraphviz 1.30 (in 32bit) it
> complains (as
>
> expected) that:
>> library(Rgraphviz)
> Error: package 'Rgraphviz' is not installed for 'arch=x64'
>
> I don't understand why the 64 bit version of graphiz is provided but not one for
> Rgraphviz.
> Have I missed it somewhere? In any case, it is suggested to build it from
> source, so I tried
> following the steps of the README from the source package of Rgraphviz (see
> below). I have the
> same error than in [3]. Does anyone know what is going on or if Kasper found a
> solution back
>
> in 2009?
>
> thanks in advance,
>
> Cheers,
>
> Ben
>
>
> C:\BenSave>R --arch x64 CMD build --binary .\Rgraphviz
> --binary is deprecated
> * checking for file '.\Rgraphviz/DESCRIPTION' ... OK
> * preparing 'Rgraphviz':
> * checking DESCRIPTION meta-information ... OK
> * cleaning src
> * installing the package to re-build vignettes
>        -----------------------------------
> * installing *source* package 'Rgraphviz' ...
> Using the following environment variables
> GRAPHVIZ_INSTALL_DIR=C:\/BenSave\/GoodiesWin64\/graphviz
> GRAPHVIZ_INSTALL_MAJOR=2
> GRAPHVIZ_INSTALL_MINOR=20
> GRAPHVIZ_INSTALL_SUBMINOR=3

These should be set to match the version of the graphviz library you're 
using, MINOR=25 SUBMINOR=20090912.0445

> Using the following compilation and linking flags for Rgraphviz
>     PKG_CPPFLAGS=-IC:\/BenSave\/GoodiesWin64\/graphviz/include/graphviz
>     PKG_LIBS=-LC:\/BenSave\/GoodiesWin64\/graphviz/bin -lgvc-4 -lgraph-4 -lcdt-4

Unfortunately, these will now be incorrect; edit Rgraphviz/configure.win 
so that the line that includes

   test ${GRAPHVIZ_INSTALL_MINOR} -eq "21"

reads

   test ${GRAPHVIZ_INSTALL_MINOR} -ge "21"

Martin


>     GVIZ_DEFS=-DGRAPHVIZ_MAJOR=2 -DGRAPHVIZ_MINOR=20 -DWin32
> Created file src/Makevars.win
> Created file R/graphviz_build_version.R
> ** libs
> cygwin warning:
>    MS-DOS style path detected: C:/PROGRA~1/R/R-213~1.0/etc/x64/Makeconf
>    Preferred POSIX equivalent is: /cygdrive/c/PROGRA~1/R/R-213~1.0/etc/x64/Makeco
> nf
>    CYGWIN environment variable option "nodosfilewarning" turns off this warning.
>    Consult the user's guide for more details about POSIX paths:
>      http://cygwin.com/cygwin-ug-net/using.html#using-pathnames
> x86_64-w64-mingw32-gcc -I"C:/PROGRA~1/R/R-213~1.0/include" -IC:/BenSave/GoodiesW
> in64/graphviz/include/graphviz -DGRAPHVIZ_MAJOR=2 -DGRAPHVIZ_MINOR=20 -DWin32
>        -O2 -Wall  -std=gnu99 -c LL_funcs.c -o LL_funcs.o
> x86_64-w64-mingw32-gcc -I"C:/PROGRA~1/R/R-213~1.0/include" -IC:/BenSave/GoodiesW
> in64/graphviz/include/graphviz -DGRAPHVIZ_MAJOR=2 -DGRAPHVIZ_MINOR=20 -DWin32
>        -O2 -Wall  -std=gnu99 -c Rgraphviz.c -o Rgraphviz.o
> x86_64-w64-mingw32-gcc -I"C:/PROGRA~1/R/R-213~1.0/include" -IC:/BenSave/GoodiesW
> in64/graphviz/include/graphviz -DGRAPHVIZ_MAJOR=2 -DGRAPHVIZ_MINOR=20 -DWin32
>        -O2 -Wall  -std=gnu99 -c RgraphvizInit.c -o RgraphvizInit.o
> x86_64-w64-mingw32-gcc -I"C:/PROGRA~1/R/R-213~1.0/include" -IC:/BenSave/GoodiesW
> in64/graphviz/include/graphviz -DGRAPHVIZ_MAJOR=2 -DGRAPHVIZ_MINOR=20 -DWin32
>        -O2 -Wall  -std=gnu99 -c agopen.c -o agopen.o
> x86_64-w64-mingw32-gcc -I"C:/PROGRA~1/R/R-213~1.0/include" -IC:/BenSave/GoodiesW
> in64/graphviz/include/graphviz -DGRAPHVIZ_MAJOR=2 -DGRAPHVIZ_MINOR=20 -DWin32
>        -O2 -Wall  -std=gnu99 -c agread.c -o agread.o
> x86_64-w64-mingw32-gcc -I"C:/PROGRA~1/R/R-213~1.0/include" -IC:/BenSave/GoodiesW
> in64/graphviz/include/graphviz -DGRAPHVIZ_MAJOR=2 -DGRAPHVIZ_MINOR=20 -DWin32
>        -O2 -Wall  -std=gnu99 -c agwrite.c -o agwrite.o
> x86_64-w64-mingw32-gcc -I"C:/PROGRA~1/R/R-213~1.0/include" -IC:/BenSave/GoodiesW
> in64/graphviz/include/graphviz -DGRAPHVIZ_MAJOR=2 -DGRAPHVIZ_MINOR=20 -DWin32
>        -O2 -Wall  -std=gnu99 -c bezier.c -o bezier.o
> x86_64-w64-mingw32-gcc -I"C:/PROGRA~1/R/R-213~1.0/include" -IC:/BenSave/GoodiesW
> in64/graphviz/include/graphviz -DGRAPHVIZ_MAJOR=2 -DGRAPHVIZ_MINOR=20 -DWin32
>        -O2 -Wall  -std=gnu99 -c buildEdgeList.c -o buildEdgeList.o
> x86_64-w64-mingw32-gcc -I"C:/PROGRA~1/R/R-213~1.0/include" -IC:/BenSave/GoodiesW
> in64/graphviz/include/graphviz -DGRAPHVIZ_MAJOR=2 -DGRAPHVIZ_MINOR=20 -DWin32
>        -O2 -Wall  -std=gnu99 -c buildNodeList.c -o buildNodeList.o
> x86_64-w64-mingw32-gcc -I"C:/PROGRA~1/R/R-213~1.0/include" -IC:/BenSave/GoodiesW
> in64/graphviz/include/graphviz -DGRAPHVIZ_MAJOR=2 -DGRAPHVIZ_MINOR=20 -DWin32
>        -O2 -Wall  -std=gnu99 -c doLayout.c -o doLayout.o
> doLayout.c: In function 'getEdgeLocs':
> doLayout.c:131:17: error: 'textlabel_t' has no member named 'p'
> doLayout.c:132:17: error: 'textlabel_t' has no member named 'p'
> doLayout.c: In function 'getNodeLayouts':
> doLayout.c:243:13: error: 'textlabel_t' has no member named 'p'
> doLayout.c:244:13: error: 'textlabel_t' has no member named 'p'
> make: *** [doLayout.o] Error 1
> ERROR: compilation failed for package 'Rgraphviz'
> * removing 'C:/Users/BVINSO~1/AppData/Local/Temp/Rtmpz6M19V/Rinst76da24d2/Rgraph
> viz'
>        -----------------------------------
> ERROR: package installation failed
>
>
>
>
> [1] http://www.murdoch-sutherland.com/Rtools/
> [2] http://www.stats.ox.ac.uk/pub/Rtools/goodies/Win64No_/
> [3] https://stat.ethz.ch/pipermail/bioconductor/2009-March/026585.html
>
>
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> PLEASE do read the posting guide http://www.R-project.org/posting-guide.html
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