[R] Heatmap in R and/or ggplot2
idris
idris.raja at gmail.com
Mon Jun 13 21:12:37 CEST 2011
I have a dataframe df with columns x, y, and height. I want to create a
heatmap-like plot that creates a grid of x by y, and then color codes the
grid depending on the value of height.
Is there a ggplot2 object to do this? I'm able to easily do this in Excel
with pivot tables and conditional formatting so I'm including an image that
is close to the output I want. I want to be able to customize what colors
are used for different values of height.
http://r.789695.n4.nabble.com/file/n3594590/heatmap.png
Sample data included below.
library(ggplot2)
df <-structure(list(x = c(1L, 1L, 1L, 1L, 1L, 1L, 1L, 1L, 1L, 1L,
2L, 2L, 2L, 2L, 2L, 2L, 2L, 2L, 2L, 2L, 3L, 3L, 3L, 3L, 3L, 3L,
3L, 3L, 3L, 3L, 4L, 4L, 4L, 4L, 4L, 4L, 4L, 4L, 4L, 4L, 5L, 5L,
5L, 5L, 5L, 5L, 5L, 5L, 5L, 5L, 6L, 6L, 6L, 6L, 6L, 6L, 6L, 6L,
6L, 6L, 7L, 7L, 7L, 7L, 7L, 7L, 7L, 7L, 7L, 7L, 8L, 8L, 8L, 8L,
8L, 8L, 8L, 8L, 8L, 8L, 9L, 9L, 9L, 9L, 9L, 9L, 9L, 9L, 9L, 9L,
10L, 10L, 10L, 10L, 10L, 10L, 10L, 10L, 10L, 10L), y = c(1L,
2L, 3L, 4L, 5L, 6L, 7L, 8L, 9L, 10L, 1L, 2L, 3L, 4L, 5L, 6L,
7L, 8L, 9L, 10L, 1L, 2L, 3L, 4L, 5L, 6L, 7L, 8L, 9L, 10L, 1L,
2L, 3L, 4L, 5L, 6L, 7L, 8L, 9L, 10L, 1L, 2L, 3L, 4L, 5L, 6L,
7L, 8L, 9L, 10L, 1L, 2L, 3L, 4L, 5L, 6L, 7L, 8L, 9L, 10L, 1L,
2L, 3L, 4L, 5L, 6L, 7L, 8L, 9L, 10L, 1L, 2L, 3L, 4L, 5L, 6L,
7L, 8L, 9L, 10L, 1L, 2L, 3L, 4L, 5L, 6L, 7L, 8L, 9L, 10L, 1L,
2L, 3L, 4L, 5L, 6L, 7L, 8L, 9L, 10L), height = c(0L, 0L, 0L,
1L, 1L, 1L, 2L, 2L, 2L, 3L, 3L, 3L, 4L, 4L, 4L, 5L, 5L, 5L, 6L,
6L, 6L, 7L, 7L, 7L, 8L, 8L, 8L, 9L, 9L, 9L, 10L, 10L, 10L, 11L,
11L, 11L, 12L, 12L, 12L, 13L, 13L, 13L, 14L, 14L, 14L, 15L, 15L,
15L, 16L, 16L, 16L, 17L, 17L, 17L, 18L, 18L, 18L, 19L, 19L, 19L,
20L, 20L, 20L, 21L, 21L, 21L, 22L, 22L, 22L, 23L, 23L, 23L, 24L,
24L, 24L, 25L, 25L, 25L, 26L, 26L, 26L, 27L, 27L, 27L, 28L, 28L,
28L, 29L, 29L, 29L, 30L, 30L, 30L, 31L, 31L, 31L, 32L, 32L, 32L,
33L)), .Names = c("x", "y", "height"), class = "data.frame", row.names =
c(NA,
-100L))
--
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