[R] calculating avg silhouette with fpc package
Matthew Pirritano
matthewpirritano at sbcglobal.net
Sun Aug 28 02:46:34 CEST 2011
All,
Excuse me for being a newbie.
I'm trying to calculate the average silhouette, a measure of cluster
validity.
I've already brought my spss data in. It's 1008 cases with 8 variables, no
missing data. So far I've run this:
> fit <- agnes(mydata, diss= FALSE, metric = "euclidean", stand=FALSE,
method = "ward")
When I look at the results for this command it appears to be more than just
the distance matrix I need to plug into cluster.stats in the fpc package.
How do I isolate the distance matrix so that I can then run cluster.stats?
Any help is much appreciated. If you need me to clarify with more info
please ask.
Thanks
matt
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