[R] Whole genome searching of 100bp "D" sequence

Ben Bolker bbolker at gmail.com
Sat Apr 16 00:14:48 CEST 2011

Amos Folarin <amosfolarin <at> gmail.com> writes:

> I was wondering I'm going about this in the correct way. I need to test if
> there are coding sequences or exons in hg19 which match a string of 100bp
> "D" i.e. [A,G or T]. However I'm getting a strange result.
> I get a hit on chr7, using the 100bp search however when I search with 60bp
> sequence of "D" I don't get any hits.

  Try posting this to the Bioconductor e-mail list, where you will
have a much better likelihood of getting useful advice. Only a few
hard-core bioinformatics people on this list.  (Do mention that you
posted here first.)

  Ben Bolker

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