[R] about the possible errors in Rgraphviz Package

[HU,ZHENGJUN]

Hi Martin,

  Thank you for the reply and help. I don't think that this is the 
version problem of Graphviz. All the R packages are installed 
under 'C:/PROGRA~1/R/R-2.10.1/library' instead of
'C:/PROGRA~1/R/R-210~1.1/library', whereas the error messages 
are:

"Error in inDL(x, as.logical(local), as.logical(now), ...) :
  unable to load shared library
 'C:/PROGRA~1/R/R-210~1.1/library/Rgraphviz/libs/Rgraphviz.dll':
  LoadLibrary failure:  The specified module could not be found."

  I will contact the Bioconductor mailing list.
  Thank you again.
  Howard

On Tue Mar 30 15:36:05 EDT 2010, Martin Morgan 
<mtmorgan at fhcrc.org> wrote:

> On 03/30/2010 10:24 AM, HU,ZHENGJUN wrote:
>> Hi Duncan,
>> 
>>> (They are pretty hard to find, but I think you can find them on 
>>> the
>>> Bioconductor site.)  It is > not enough to install the Rgraphviz
>>> package, you also need to install Graphviz.
>> 
>>  Yes I did. Before installing the Rgraphviz package 
>> successfully, (1) I
>> downloaded graphviz-2.26.3.msi for MS Windows (XP) and installed 
>> it
>> successfully and (2) I also installed the packages from 
>> Bioconductor by:
>> (Note: I use MS Windows XP and R 2.10.1 version)
> 
> This is a bioconductor package so please ask on the Bioconductor 
> mailing
> list
> 
> http://bioconductor.org/docs/mailList.html
> 
> See the 'README' file in the 'tar.gz' file at
> 
> 
>   http://bioconductor.org/packages/release/Software.html
>   http://bioconductor.org/packages/2.5/bioc/html/Rgraphviz.html
> 
> 
> 
> http://bioconductor.org/packages/2.5/bioc/src/contrib/Rgraphviz_1.24.0.tar.gz
> 
> which says
> 
> 
> o. install Graphviz ***2.20.3.1*** Windows ***binary*** 
> distribution from
> 
> 
> http://www.graphviz.org/pub/graphviz/stable/windows/graphviz-2.20.3.1.msi
> 
> you must use this version of graphviz. File paths must be 
> correct.
> 
> Martin
> 
> 
>> 
>> source("http://www.bioconductor.org/biocLite.R")
>> biocLite()
>> 
>>  I got those error messages:
>> 
>> "Error in inDL(x, as.logical(local), as.logical(now), ...) :
>>  unable to load shared library
>> 'C:/PROGRA~1/R/R-210~1.1/library/Rgraphviz/libs/Rgraphviz.dll':
>>   LoadLibrary failure:  The specified module could not be found."
>> 
>>  Obviously, it seems it is the package problem because it should 
>> go to
>> 'C:/PROGRA~1/R/R-2.10.1/library/Rgraphviz/libs/Rgraphviz.dll' 
>> instead of
>> 'C:/PROGRA~1/R/R-210~1.1/library/Rgraphviz/libs/Rgraphviz.dll'
>> 
>>  Thank you for the reply. Howard
>> 
>> 
>> On Tue Mar 30 12:50:44 EDT 2010, Duncan Murdoch 
>> <murdoch at stats.uwo.ca>
>> wrote:
>> 
>>> On 30/03/2010 10:44 AM, HU,ZHENGJUN wrote:
>>>> Hi All,
>>>> 
>>>>   I tried to install the package of Rgraphviz in the following 
>>>> two
>>>> ways successfully:
>>>> 
>>>> source("http://bioconductor.org/biocLite.R")
>>>> biocLite("Rgraphviz")
>>>> 
>>>> install.packages(pkgs="C:/Progra~1/R/lib_download/Rgraphviz_1.24.0.zip",
>>>> lib="C:/Progra~1/R/R-2.10.1/library", repos=NULL)
>>>> 
>>>> but when I loaded the package though library(Rgraphviz) or
>>>> library("Rgraphviz"), and got the same error message below:
>>>> 
>>>> "Error in inDL(x, as.logical(local), as.logical(now), ...) :
>>>>   unable to load shared library
>>>> 'C:/PROGRA~1/R/R-210~1.1/library/Rgraphviz/libs/Rgraphviz.dll':
>>>>   LoadLibrary failure:  The specified module could not be found."
>>>> 
>>> 
>>> Most likely the problem is that you haven't followed the 
>>> installation
>>> instructions.  (They are pretty hard to find, but I think you 
>>> can find
>>> them on the Bioconductor site.)  It is not enough to install the
>>> Rgraphviz package, you also need to install Graphviz.
>>> 
>>> Duncan Murdoch
>>>> I think that it is the error in the package because it should 
>>>> go to
>>>> 'C:/PROGRA~1/R/R-2.10.1/library/Rgraphviz/libs/Rgraphviz.dll' 
>>>> instead
>>>> of 'C:/PROGRA~1/R/R-210~1.1/library/Rgraphviz/libs/Rgraphviz.dll'
>>>> 
>>>> Could anyone help me to solve to problem?
>>>> Thank you very much for the help. Howard
>>>> 
>>>> ______________________________________________
>>>> R-help at r-project.org mailing list
>>>> https://stat.ethz.ch/mailman/listinfo/r-help
>>>> PLEASE do read the posting guide
>>>> http://www.R-project.org/posting-guide.html
>>>> and provide commented, minimal, self-contained, reproducible 
>>>> code.
>>>> 
>>> 
>>> 
>>> 
>> 
>> 
>> 
>> -- HU,ZHENGJUN
>> 
>> ______________________________________________
>> R-help at r-project.org mailing list
>> https://stat.ethz.ch/mailman/listinfo/r-help
>> PLEASE do read the posting guide
>> http://www.R-project.org/posting-guide.html
>> and provide commented, minimal, self-contained, reproducible 
>> code.
> 
> 
> -- Martin Morgan
> Computational Biology / Fred Hutchinson Cancer Research Center
> 1100 Fairview Ave. N.
> PO Box 19024 Seattle, WA 98109
> 
> Location: Arnold Building M1 B861
> Phone: (206) 667-2793
> 
> 



--
HU,ZHENGJUN