[R] *** caught segfault *** address 0x18, cause 'memory not mapped'

[Henrik Bengtsson]

FYI,

your more likely to get any response to this if you first check if the
issue has been solved in a more recent version of R.  Your version is
>1.5 years old.

/Henrik

On Thu, Mar 25, 2010 at 2:03 PM, bernardo lagos alvarez
<blacertain at gmail.com> wrote:
> Hello R Community,
>
> I've been run the following codes. However, I've been getting an
> unusual segfault
> that I'm unable to trace its origin. Please give me a  light to
> decipher the  "caught segfault"
>
> Thanks for you attention.
>
> Bernardo.
>
>> options(STERM='iESS', editor='emacsclient')
>> rm(list = ls())
>
>> > source("fgenIGLD.R")        #RNG of IGLD(mu,b,sigma)
>
>> > source("fsYUTH.R")          #the fucntions Y,U,Tbbarran and H necessary to calcualte the hat{b}
>
>> > source("fMLEPFP.R")           #the maximun likelihood profile estimation of IGLD(mu,sigma)
>
>> > source("f04P.R")    #it to compute the mle, jacknife  and bootstrap
>
>> > source("fprofileloglik06.R") #the log-likelihood profile of IGLD(mu,sigma)
>
>> > source("fmgfIGLD.R")        #read the fmgfIGLD.R file defining the fmgfIGLD function. It is useful for the prox.
>
>> > source("f02.R")        #here the function  kappas.and.deriv(n,
>
>> > source("fsimbiasIGLDP.R")    #it to compute de bias of jacknife  and bootstrap
>
>> > source("f01P.R")             #in this is "fmainsimbiasP"
>
>> > ptm<-proc.time()
>> sink("out22031001.txt")
>
>> > fmainsimbiasP(10000,100)
>
> proc.time()-ptm
>
>  *** caught segfault ***
> address 0x18, cause 'memory not mapped'
>
> Traceback:
>  1: nlm(f = fprof_deriv, x = x, p = parHInt, b = parFIX, hessian = T,
>   iterlim = 2000, check.analyticals = F, stepmax = 10)
>  2: doTryCatch(return(expr), name, parentenv, handler)
>  3: tryCatchOne(expr, names, parentenv, handlers[[1]])
>  4: tryCatchList(expr, classes, parentenv, handlers)
>  5: tryCatch(expr, error = function(e) {    call <- conditionCall(e)
>  if (!is.null(call)) {        if (identical(call[[1]],
> quote(doTryCatch)))             call <- sys.call(-4)        dcall <-
> deparse(call)[1]        prefix <- paste("Error in", dcall, ": ")
>  LONG <- 75        msg <- conditionMessage(e)        sm <-
> strsplit(msg, "\n")[[1]]        if (14 + nchar(dcall, type = "w") +
> nchar(sm[1], type = "w") >             LONG)             prefix <-
> paste(prefix, "\n  ", sep = "")    }    else prefix <- "Error : "
> msg <- paste(prefix, conditionMessage(e), "\n", sep = "")
> .Internal(seterrmessage(msg[1]))    if (!silent &&
> identical(getOption("show.error.messages"),         TRUE)) {
> cat(msg, file = stderr())        .Internal(printDeferredWarnings())
> }    invisible(structure(msg, class = "try-error"))})
>  6: try(nlm(f = fprof_deriv, x = x, p = parHInt, b = parFIX, hessian =
> T,     iterlim = 2000, check.analyticals = F, stepmax = 10), silent =
> T)
>  7: fMLEPFP(datanpboot, FALSE)
>  8: fboot.jack.mleP(data, B)
>  9: fsimbiasIGLDP(N[i], parH[, j], R, B)
> 10: fmainsimbiasP(10000, 100)
>
> Possible actions:
> 1: abort (with core dump, if enabled)
> 2: normal R exit
> 3: exit R without saving workspace
> 4: exit R saving workspace
> Selection: Selection: Selection: 2
> Save workspace image? [y/n/c]: n
>
> Process R:2 finished at Thu Mar 25 08:06:26 2010
>
>>sessionInfo()
> R version 2.7.2 beta (2008-08-16 r46368)
> i486-pc-linux-gnu
>
> locale:
> LC_CTYPE=es_CL.UTF-8;LC_NUMERIC=C;LC_TIME=es_CL.UTF-8;LC_COLLATE=es_CL.UTF-8;LC_MONETARY=C;LC_MESSAGES=es_CL.UTF-8;LC_PAPER=es_CL.UTF-8;LC_NAME=C;LC_ADDRESS=C;LC_TELEPHONE=C;LC_MEASUREMENT=es_CL.UTF-8;LC_IDENTIFICATION=C
>
> attached base packages:
> [1] stats     graphics  grDevices utils     datasets  methods   base
>
>> version
>               _
> platform       i486-pc-linux-gnu
> arch           i486
> os             linux-gnu
> system         i486, linux-gnu
> status         beta
> major          2
> minor          7.2
> year           2008
> month          08
> day            16
> svn rev        46368
> language       R
> version.string R version 2.7.2 beta (2008-08-16 r46368)
>
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