[R] Win Server x64/R: Memory Allocation Problem
will.eagle at gmx.net
will.eagle at gmx.net
Wed Jul 14 17:51:17 CEST 2010
Dear all,
how can I use R on a 64-bit Windows Server 2003 machine (24GB RAM) with more than 3GB of working memory and make full use of it.
I started R --max-mem-size=3G since I got the warning that larger values are too large and ignored.
In R I got:
> memory.size(max=FALSE)
[1] 10.5
> memory.size(max=TRUE)
[1] 12.69
> memory.limit()
[1] 3072
but when I run the next command, I get an error:
>climb.expset <- ReadAffy(celfile.path="./Data/Original/CLIMB/CEL/")
Error: cannot allocate vector of size 2.4 Gb
Here is the R version I am using:
platform i386-pc-mingw32
arch i386
os mingw32
system i386, mingw32
version.string R version 2.11.1 (2010-05-31)
What can I do?
Thanks a lot in advance,
Will
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