[R] Error while installing 'netmodels'

[Uwe Ligges]

On 17.02.2010 08:46, anupam sinha wrote:
> Dear all ,
>                    I am trying to install a package by name 'netmodels' keep
> on getting the following error :
>
>
>> install.packages("netmodels")
> Warning in install.packages("netmodels") :
>    argument 'lib' is missing: using '/usr/lib64/R/library'
> also installing the dependency ‘VGAM’
>
> trying URL 'http://cran.stat.ucla.edu/src/contrib/VGAM_0.7-10.tar.gz'
> Content type 'application/x-tar' length 1608488 bytes (1.5 Mb)
> opened URL
> ==================================================
> downloaded 1.5 Mb
>
> trying URL 'http://cran.stat.ucla.edu/src/contrib/netmodels_0.2.tar.gz'
> Content type 'application/x-tar' length 20049 bytes (19 Kb)
> opened URL
> ==================================================
> downloaded 19 Kb
>
> * Installing *source* package ‘VGAM’ ...
> ** libs
> gfortran   -fpic  -O2 -g -c cqof.f -o cqof.o
> gfortran: error trying to exec 'f951': execvp: No such file or directory
> make: *** [cqof.o] Error 1


Your installation of the compilers seems to be broken.
You may also want to upgrade to a more recent version of R.

Uwe Ligges




> ERROR: compilation failed for package ‘VGAM’
> * Removing ‘/usr/lib64/R/library/VGAM’
> * Installing *source* package ‘netmodels’ ...
> ** R
> ** data
> ** preparing package for lazy loading
> Error : package 'VGAM' required by 'netmodels' could not be found
> ERROR: lazy loading failed for package ‘netmodels’
> * Removing ‘/usr/lib64/R/library/netmodels’
>
> The downloaded packages are in
>          ‘/tmp/RtmpnUr2jb/downloaded_packages’
> Updating HTML index of packages in '.Library'
> Warning messages:
> 1: In install.packages("netmodels") :
>    installation of package 'VGAM' had non-zero exit status
> 2: In install.packages("netmodels") :
>    installation of package 'netmodels' had non-zero exit status
>
> Here's my sessionInfo(). Can anyone help me out with this ?
>
>
>> sessionInfo()
> R version 2.9.0 (2009-04-17)
> x86_64-redhat-linux-gnu
>
> locale:
> LC_CTYPE=en_US.UTF-8;LC_NUMERIC=C;LC_TIME=en_US.UTF-8;LC_COLLATE=en_US.UTF-8;LC_MONETARY=C;LC_MESSAGES=en_US.UTF-8;LC_PAPER=en_US.UTF-8;LC_NAME=C;LC_ADDRESS=C;LC_TELEPHONE=C;LC_MEASUREMENT=en_US.UTF-8;LC_IDENTIFICATION=C
>
> attached base packages:
> [1] stats     graphics  grDevices utils     datasets  methods   base
>
> loaded via a namespace (and not attached):
> [1] tcltk_2.9.0 tools_2.9.0
>> Detecting remotely related proteins by their
> Error: unexpected symbol in "Detecting remotely"
>> interactions and sequence similarity
> Error: unexpected symbol in "interactions and"
>
>
>
> Regards,
>
> Anupam Sinha
>
> 	[[alternative HTML version deleted]]
>
>
>
>
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