[R] R abrupt exit

[Peter Ehlers]

Google leads to some discussion on the Intel Sofware Network:

  http://software.intel.com/en-us/forums/showthread.php?t=64585

Be warned: I haven't read the discussion.

  -Peter Ehlers

On 2010-04-02 9:30, jacob wrote:
> Dear Lists:
>
> I recently ran quite annoyance problem while running R on Ubuntu 9.10.
>   When running the  program,  the system suddenly exit from  the R
> session with the following warnings:
>
> ############################ #############
> OMP: Hint: This may cause performance degradation and correctness
> issues. Set environment variable KMP_DUPLICATE_LIB_OK=TRUE to ignore
> this problem and force the program to continue anyway. Please note
> that the use of KMP_DUPLICATE_LIB_OK is unsupported and using it may
> cause undefined behavior. For more information, please contact
> Intel(R) Premier Support.
> Aborted
> ##########################################
> I have to restart R again, and all the calculations are being lost.
>
> According to the warnings, I set the environment to true, no good. I
> reinstalled the R program again, no good either.   I googled the
> problem, it seems that there was no R help on the topic so far.
>
>
> Any suggestions that the whole OS may have conflicts?  I have only one
> copy of the following file on my computer system?
>
> /usr/lib/R/lib/libguide.so
>
>
> Thanks.
>
> jacob
>
> #############################################################################
>> options("KMP_DUPLICATE_LIB_OK")
> $KMP_DUPLICATE_LIB_OK
> [1] TRUE
>> sessionInfo()
> R version 2.10.1 (2009-12-14)
> x86_64-pc-linux-gnu
>
> locale:
>   [1] LC_CTYPE=en_US.UTF-8       LC_NUMERIC=C
>   [3] LC_TIME=en_US.UTF-8        LC_COLLATE=en_US.UTF-8
>   [5] LC_MONETARY=C              LC_MESSAGES=en_US.UTF-8
>   [7] LC_PAPER=en_US.UTF-8       LC_NAME=C
>   [9] LC_ADDRESS=C               LC_TELEPHONE=C
> [11] LC_MEASUREMENT=en_US.UTF-8 LC_IDENTIFICATION=C
>
> attached base packages:
> [1] datasets  grDevices splines   graphics  stats     utils     methods
> [8] base
>
> other attached packages:
>   [1] Design_2.3-0         Hmisc_3.7-0          survival_2.35-8
>   [4] GEOquery_2.11.3      RCurl_1.4-0          bitops_1.0-4.1
>   [7] affy_1.24.2          Biobase_2.6.1        preprocessCore_1.8.0
> [10] R.methodsS3_1.0.3
>
> loaded via a namespace (and not attached):
> [1] affyio_1.14.0  cluster_1.12.1 grid_2.10.1    lattice_0.18-3
>
> ______________________________________________
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> PLEASE do read the posting guide http://www.R-project.org/posting-guide.html
> and provide commented, minimal, self-contained, reproducible code.
>
>

-- 
Peter Ehlers
University of Calgary