[R] Rcommander installation fails on Fedora 9
Paul Smith
phhs80 at gmail.com
Fri Aug 15 23:30:14 CEST 2008
John,
I am not sure whether the following solves the problem, but you could try it:
yum install gcc-gfortran
Best,
Paul
On Fri, Aug 15, 2008 at 10:02 PM, John Sorkin
<jsorkin at grecc.umaryland.edu> wrote:
> Paul,
> I installed R-devel as root, and then re-tried to install R-cmdr as a
> regular users. Unfortunately I still receive multiple error messages.
> Any suggestions? I have pasted on set of error messages below:
>
> * DONE (multcomp)
> * Installing *source* package 'party' ...
> ** libs
> gcc -m32 -std=gnu99 -I/usr/include/R -I/usr/local/include -fpic -O2
> -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector
> --param=ssp-buffer-size=4 -m32 -march=i386 -mtune=generic
> -fasynchronous-unwind-tables -c Classes.c -o Classes.o
> gcc -m32 -std=gnu99 -I/usr/include/R -I/usr/local/include -fpic -O2
> -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector
> --param=ssp-buffer-size=4 -m32 -march=i386 -mtune=generic
> -fasynchronous-unwind-tables -c Convenience.c -o Convenience.o
> gcc -m32 -std=gnu99 -I/usr/include/R -I/usr/local/include -fpic -O2
> -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector
> --param=ssp-buffer-size=4 -m32 -march=i386 -mtune=generic
> -fasynchronous-unwind-tables -c Distributions.c -o Distributions.o
> gcc -m32 -std=gnu99 -I/usr/include/R -I/usr/local/include -fpic -O2
> -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector
> --param=ssp-buffer-size=4 -m32 -march=i386 -mtune=generic
> -fasynchronous-unwind-tables -c IndependenceTest.c -o IndependenceTest.o
> IndependenceTest.c: In function 'C_GlobalTest':
> IndependenceTest.c:138: warning: unused variable 'ithiswhichNA'
> IndependenceTest.c:136: warning: unused variable 'thiswhichNA'
> gcc -m32 -std=gnu99 -I/usr/include/R -I/usr/local/include -fpic -O2
> -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector
> --param=ssp-buffer-size=4 -m32 -march=i386 -mtune=generic
> -fasynchronous-unwind-tables -c LinearStatistic.c -o LinearStatistic.o
> gfortran -m32 -fpic -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2
> -fexceptions -fstack-protector --param=ssp-buffer-size=4 -m32
> -march=i386 -mtune=generic -fasynchronous-unwind-tables
> -I/usr/lib/gfortran/modules -c mvt.f -o mvt.o
> mvt.f:5.72:
>
> & MAXPTS, ABSEPS, RELEPS, ERROR, VALUE, INFORM )
> 1
> Warning: Line truncated at (1)
> mvt.f:84.33:
>
> SUBROUTINE MVSUBR( N, W, NF, F )
> 1
> Warning: Unused dummy argument 'nf' at (1)
> mvt.f:179.72:
>
> IF ( INFI(1) .NE. 0 ) VL = VL - MVSTDT( NU, A(1)-DL(1) )
> 1
> Warning: Line truncated at (1)
> mvt.f:194.72:
>
> SUBROUTINE MVVLSB( N,W,R,DL,INFI, A,B,COV, Y, DI,EI, ND, VALUE )
> 1
> Warning: Line truncated at (1)
> mvt.f:362.72:
>
> IF ( INFI(I) .NE. 0 ) Y(I) = MVTDNS( 0, AMIN )
> 1
> Warning: Line truncated at (1)
> mvt.f:363.72:
>
> IF ( INFI(I) .NE. 1 ) Y(I) = Y(I) - MVTDNS( 0, BMIN )
> 1
> Warning: Line truncated at (1)
> mvt.f:817.72:
>
> IF ( R .LT. 0 ) BVN = -BVN + MAX( ZERO, MVPHI(-H) - MVPHI(-K) )
> 1
> Warning: Line truncated at (1)
> mvt.f:858.72:
>
> DOUBLE PRECISION FUNCTION MVBVT( NU, LOWER, UPPER, INFIN, CORREL )
> 1
> Warning: Line truncated at (1)
> mvt.f:1029.72:
>
> bvt = atan2(-snu*(hkn*qhrk+hpk*hkrn),hkn*hkrn-nu*hpk*qhrk)/tpi
> 1
> Warning: Line truncated at (1)
> mvt.f:1284.72:
>
> FINEST(K) = FINEST(K) + ( FINVAL(K) - FINEST(K) )/( 1+VARPRD )
> 1
> Warning: Line truncated at (1)
> mvt.f:1476.72:
>
> VALUES(J) = VALUES(J) + ( FS(J) - VALUES(J) )/( 2*K-1 ) Warning: Line truncated at (1)
> gcc -m32 -std=gnu99 -I/usr/include/R -I/usr/local/include -fpic -O2
> -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector
> --param=ssp-buffer-size=4 -m32 -march=i386 -mtune=generic
> -fasynchronous-unwind-tables -c Node.c -o Node.o
> Node.c: In function 'C_Node':
> Node.c:57: warning: unused variable 'dweights'
> gcc -m32 -std=gnu99 -I/usr/include/R -I/usr/local/include -fpic -O2
> -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector
> --param=ssp-buffer-size=4 -m32 -march=i386 -mtune=generic
> -fasynchronous-unwind-tables -c Predict.c -o Predict.o
> Predict.c: In function 'C_get_node':
> Predict.c:124: warning: unused variable 'dweights'
> Predict.c:123: warning: unused variable 'weights'
> gcc -m32 -std=gnu99 -I/usr/include/R -I/usr/local/include -fpic -O2
> -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector
> --param=ssp-buffer-size=4 -m32 -march=i386 -mtune=generic
> -fasynchronous-unwind-tables -c RandomForest.c -o RandomForest.o
> gcc -m32 -std=gnu99 -I/usr/include/R -I/usr/local/include -fpic -O2
> -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector
> --param=ssp-buffer-size=4 -m32 -march=i386 -mtune=generic
> -fasynchronous-unwind-tables -c S3Classes.c -o S3Classes.o
> S3Classes.c: In function 'S3get_sumweights':
> S3Classes.c:61: warning: value computed is not used
> S3Classes.c:62: warning: control reaches end of non-void function
> gcc -m32 -std=gnu99 -I/usr/include/R -I/usr/local/include -fpic -O2
> -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector
> --param=ssp-buffer-size=4 -m32 -march=i386 -mtune=generic
> -fasynchronous-unwind-tables -c Splits.c -o Splits.o
> gcc -m32 -std=gnu99 -I/usr/include/R -I/usr/local/include -fpic -O2
> -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector
> --param=ssp-buffer-size=4 -m32 -march=i386 -mtune=generic
> -fasynchronous-unwind-tables -c SurrogateSplits.c -o SurrogateSplits.o
> gcc -m32 -std=gnu99 -I/usr/include/R -I/usr/local/include -fpic -O2
> -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector
> --param=ssp-buffer-size=4 -m32 -march=i386 -mtune=generic
> -fasynchronous-unwind-tables -c TestStatistic.c -o TestStatistic.o
> gcc -m32 -std=gnu99 -I/usr/include/R -I/usr/local/include -fpic -O2
> -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector
> --param=ssp-buffer-size=4 -m32 -march=i386 -mtune=generic
> -fasynchronous-unwind-tables -c TreeGrow.c -o TreeGrow.o
> gcc -m32 -std=gnu99 -I/usr/include/R -I/usr/local/include -fpic -O2
> -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector
> --param=ssp-buffer-size=4 -m32 -march=i386 -mtune=generic
> -fasynchronous-unwind-tables -c Utils.c -o Utils.o
> Utils.c: In function 'C_MPinv':
> Utils.c:187: warning: unused variable 'svdx'
> gcc -m32 -std=gnu99 -shared -L/usr/local/lib -o party.so Classes.o
> Convenience.o Distributions.o IndependenceTest.o LinearStatistic.o mvt.o
> Node.o Predict.o RandomForest.o S3Classes.o Splits.o SurrogateSplits.o
> TestStatistic.o TreeGrow.o Utils.o -L/usr/lib/R/lib -lRlapack
> -L/usr/lib/R/lib -lRblas -lgfortran -lm -lgfortran -lm -L/usr/lib/R/lib
> -lR
>
>
>
>
>
>
> Thanks,
> John
>
> John Sorkin M.D., Ph.D.
> Chief, Biostatistics and Informatics
> Baltimore VA Medical Center GRECC,
> University of Maryland School of Medicine Claude D. Pepper OAIC,
> University of Maryland Clinical Nutrition Research Unit, and
> Baltimore VA Center Stroke of Excellence
>
> University of Maryland School of Medicine
> Division of Gerontology
> Baltimore VA Medical Center
> 10 North Greene Street
> GRECC (BT/18/GR)
> Baltimore, MD 21201-1524
>
> (Phone) 410-605-7119
> (Fax) 410-605-7913 (Please call phone number above prior to faxing)
> jsorkin at grecc.umaryland.edu
>>>> "Paul Smith" <phhs80 at gmail.com> 08/15/08 4:02 PM >>>
> On Fri, Aug 15, 2008 at 6:15 PM, John Sorkin
> <jsorkin at grecc.umaryland.edu> wrote:
>> Fedora 9
>> R 2.7.1
>>
>> I tried to install R on my Linux system using
>> install.packages("Rcmdr", depen> I received many, many, many error messages. I hope someone can suggest
> a
>> fix.
>>
>> The output from warnings()
>> is listed below. A more detailed list of errors from one of the failed
>> installations is listed below the warnings:
>
> Have you R-devel rpm installed?
>
> Paul
>
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