[R] limits/thresholds for arrayWeights in the limma package
Radek Blatny
blatny at blatny.com
Thu Aug 7 15:05:46 CEST 2008
Is there any limit ratio of between-array weight values, which one
can get using the arrayWeights() function in the limma package
<http://www.biomedcentral.com/1471-2105/7/261/abstract>? For
instance, if one array has the weight value - let's say - 4 and the
rest between 0.5 and 2, shall I keep the array and use it with the
weight array, or rather discard the one array and apply again the
arrayWeights() again and continue to results? I am particularly
interested in answers related to the mouse 430_2 chips.
Regards, Radek
Radek Blatny, MSc.
Institute of Molecular Genetics
Department of Mouse Molecular Genetics (Jiri Forejt unit)
Czech Academy of Sciences
Videnska 1083
142 20, Prague
Czech Republic
Tel. (+420) 241 062 260
Fax (+420) 241 062 154
http://www.img.cas.cz/mmg
email: blatny at img.cas.cz
Skype name: blatny
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